Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_584

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_583: 8951 - HMMPfam-Protein of Unknown function (DUF1690)-PF07956, at 1393876 to 1394660 8951 mRNA_584: 8952 - K01259 pip proline iminopeptidase, at 1394806 to 1396431 8952 mRNA_585: 8953 - HMMPfam-Polynucleotide kinase 3 phosphatase-PF08645,HMMPfam-AAA domain-PF13671,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF56784, at 1396746 to 1398490 8953

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,393,819 + 2.2
1,393,822 - -1.0
1,393,839 + 0.6
1,393,848 - -2.8
1,393,863 - -0.1
1,393,971 - 8951 mRNA_583 0.12 2.1
1,393,981 + 8951 mRNA_583 0.13 0.2
1,393,982 - 8951 mRNA_583 0.14 0.7
1,394,020 - 8951 mRNA_583 0.18 1.6
1,394,120 - 8951 mRNA_583 0.31 0.1
1,394,397 - 8951 mRNA_583 0.66 -0.4
1,394,541 + 8951 mRNA_583 0.85 -0.0
1,394,569 - 8951 mRNA_583 0.88 -2.5
1,394,799 + -0.3
1,394,824 - 0.3
1,395,004 + 8952 mRNA_584 0.12 0.8
1,395,188 + 8952 mRNA_584 0.23 -0.8
1,395,251 + 8952 mRNA_584 0.27 1.9
1,395,872 + 8952 mRNA_584 0.66 0.1
1,396,112 - 8952 mRNA_584 0.80 -0.0
1,396,135 + 8952 mRNA_584 0.82 -0.1
1,396,294 - -0.7
1,396,313 + -0.6
1,396,417 + -0.0
1,396,429 - 0.1
1,396,430 + -0.5
1,396,436 + -1.9
1,396,440 + -0.2
1,396,739 - 1.5
1,396,754 - 1.1
1,397,025 - 8953 mRNA_585 0.16 -1.1
1,397,048 + 8953 mRNA_585 0.17 0.3
1,397,318 + 8953 mRNA_585 0.33 1.1
1,397,341 - 8953 mRNA_585 0.34 -1.0