Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_377

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_376: 8744 - K00381 cysI sulfite reductase (NADPH) hemoprotein beta-component, at 872244 to 876604 8744 mRNA_377: 8745 - KOG1515 Arylacetamide deacetylase, at 876931 to 878832 8745 mRNA_378: 8746 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 879759 to 883039 8746

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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875,981 + 8744 mRNA_376 0.86 0.0
876,104 + 8744 mRNA_376 0.89 -1.8
876,104 - 8744 mRNA_376 0.89 -0.2
876,393 - -0.8
876,401 - 0.6
876,651 - 1.1
876,686 + 0.7
876,824 - -0.3
876,878 - -1.9
876,911 + 0.4
876,985 + 1.1
877,003 - -1.9
877,097 - 0.9
877,181 - 8745 mRNA_377 0.13 -0.3
877,403 + 8745 mRNA_377 0.25 0.7
877,825 + 8745 mRNA_377 0.47 1.2
877,857 - 8745 mRNA_377 0.49 0.3
877,869 + 8745 mRNA_377 0.49 0.5
877,893 + 8745 mRNA_377 0.51 0.5
878,174 - 8745 mRNA_377 0.65 -0.4
878,331 + 8745 mRNA_377 0.74 -0.0
878,765 - 0.2
878,887 + -0.2
878,931 + 0.1
878,938 + -0.2
878,945 - -0.3
878,947 + -0.6
878,997 - -0.0
879,021 + 0.2
879,024 + -0.7
879,037 - -0.6
879,062 + -2.1
879,111 - -0.6
879,125 - 0.2
879,128 - -0.0
879,207 - -0.3
879,274 + -0.0
879,278 - 0.9
879,278 - 1.5
879,282 + -1.1
879,285 + 0.4
879,291 - -1.3
879,318 - -0.1
879,342 - 2.5
879,354 + -0.1
879,365 + -1.4
879,441 + -0.7
879,468 - 0.6
879,547 + 0.6
879,718 - 0.4