Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_372

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_371: 8739 - HMMPfam-Protein of unknown function (DUF2408)-PF10303, at 862374 to 864566 8739 mRNA_372: 8740 - BLAST arsenical pump membrane protein [Exophiala dermat..., at 864831 to 866823 8740 mRNA_373: 8741 - KOG2542 Uncharacterized conserved protein (YdiU family), at 866989 to 869456 8741

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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864,094 - 8739 mRNA_371 0.78 0.5
864,144 - 8739 mRNA_371 0.81 -0.2
864,151 - 8739 mRNA_371 0.81 0.4
864,304 - 8739 mRNA_371 0.88 1.9
864,317 + 8739 mRNA_371 0.89 -1.9
864,327 + 8739 mRNA_371 0.89 0.7
864,449 - 0.1
864,571 + -0.8
864,592 - 0.5
864,617 - -2.2
864,644 + -1.2
864,743 - 0.4
865,059 + 8740 mRNA_372 0.11 0.9
865,185 - 8740 mRNA_372 0.18 -1.7
865,192 + 8740 mRNA_372 0.18 -1.8
865,222 - 8740 mRNA_372 0.20 0.8
865,530 + 8740 mRNA_372 0.35 0.0
865,657 + 8740 mRNA_372 0.41 -1.5
865,661 + 8740 mRNA_372 0.42 0.9
865,805 + 8740 mRNA_372 0.49 0.2
865,818 + 8740 mRNA_372 0.50 0.2
865,949 - 8740 mRNA_372 0.56 -2.2
865,968 + 8740 mRNA_372 0.57 0.5
866,565 - 8740 mRNA_372 0.87 -3.5
866,689 - -0.1
866,694 - -2.7
866,701 + 1.1
866,710 - -1.3
866,715 + -1.3
866,723 + 1.6
866,725 + -0.1
866,856 - -0.3
866,857 + 0.6
866,861 + -0.2
866,862 + -1.2
866,866 - 0.4
866,871 + 0.1
866,872 - 1.7
866,872 - 0.3
866,872 - 0.5
866,872 - -0.1
866,874 + -1.1
866,878 + -0.9
866,883 - -2.6
866,890 - -0.0
866,894 + -0.5
867,004 - -0.9
867,014 - 0.3
867,015 - -0.6
867,020 + -0.0
867,022 - 0.4
867,027 - -1.8
867,030 - -0.2
867,034 + 0.4
867,038 + 0.1
867,043 - 1.1
867,054 - 0.5
867,162 + -0.5
867,181 - -0.6
867,451 - 8741 mRNA_373 0.19 0.8
867,484 + 8741 mRNA_373 0.20 0.1
867,647 - 8741 mRNA_373 0.27 -0.2