Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_369

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853834 to 856786 8736 mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857232 to 859087 8737 mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859391 to 862171 8738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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856,522 - 0.1
856,539 + -1.0
856,548 - -0.2
856,554 + -1.1
856,668 - -0.1
856,695 - 2.2
856,775 + 0.9
856,798 - -0.8
856,823 + -0.9
856,823 + -2.6
856,827 + 0.2
856,854 + 0.7
856,954 + 0.1
856,954 + 0.5
856,972 - -0.8
856,977 + -0.2
856,988 + 1.4
856,992 + 0.2
856,992 - 2.1
857,010 - 0.9
857,017 - -0.2
857,029 + -0.3
857,053 - -2.0
857,055 - -1.0
857,072 + -0.1
857,075 - -0.2
857,115 - 1.5
857,131 + -0.3
857,165 + -1.8
857,165 + -0.6
857,170 - 0.9
857,367 + -2.0
857,391 + 1.3
857,683 + 8737 mRNA_369 0.24 -0.2
858,116 - 8737 mRNA_369 0.48 0.4
858,121 - 8737 mRNA_369 0.48 -1.2
858,298 + 8737 mRNA_369 0.57 -0.2
858,399 - 8737 mRNA_369 0.63 -0.3
858,720 + 8737 mRNA_369 0.80 -0.2
859,014 - -0.3
859,174 - 1.1
859,178 + 1.1
859,181 + 0.1
859,183 + -0.6
859,186 + 0.2
859,285 + -1.2
859,329 - -0.8
859,343 + -1.4
859,448 - 0.3
859,599 + 0.3
859,878 - 8738 mRNA_370 0.18 -0.9
859,900 + 8738 mRNA_370 0.18 1.9
859,954 - 8738 mRNA_370 0.20 2.6