Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_358

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_357: 8725 - K01556 KYNU, kynU kynureninase, at 833952 to 835830 8725 mRNA_358: 8726 - KOG1515 Arylacetamide deacetylase, at 836164 to 837965 8726 mRNA_359: 8727 - BLAST minor histocompatibility antigen H13 [Kwoniella d..., at 838218 to 839816 8727

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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835,177 - 8725 mRNA_357 0.65 -1.7
835,216 + 8725 mRNA_357 0.67 -1.2
835,343 - 8725 mRNA_357 0.74 -1.6
835,499 + 8725 mRNA_357 0.82 -2.1
835,724 - -0.7
835,750 - 0.9
835,759 - -2.9
835,762 - -2.7
835,899 - -0.3
835,901 + 0.4
835,915 + 1.8
835,918 - 2.8
836,049 - 0.0
836,052 + 0.5
836,059 + -1.1
836,070 - 0.5
836,194 + -0.8
836,466 + 8726 mRNA_358 0.17 -0.8
836,903 - 8726 mRNA_358 0.41 0.4
837,175 - 8726 mRNA_358 0.56 -0.1
837,317 + 8726 mRNA_358 0.64 0.1
837,599 - 8726 mRNA_358 0.80 -0.8
837,609 + 8726 mRNA_358 0.80 -0.9
837,899 - 0.2
838,049 - -2.0
838,075 + 0.6
838,186 - -1.4
838,231 + -1.0
838,327 + -0.4
838,338 + -0.3
838,341 - -0.4
838,349 + 0.8
838,633 - 8727 mRNA_359 0.26 -0.4
838,666 - 8727 mRNA_359 0.28 -0.9
838,752 - 8727 mRNA_359 0.33 0.9
838,926 - 8727 mRNA_359 0.44 -0.1