Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_357

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_356: 8724 - K02727 PSMA3 20S proteasome subunit alpha 7, at 832333 to 833691 8724 mRNA_357: 8725 - K01556 KYNU, kynU kynureninase, at 833952 to 835830 8725 mRNA_358: 8726 - KOG1515 Arylacetamide deacetylase, at 836164 to 837965 8726

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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833,804 - 0.1
833,808 - 0.7
833,810 - 0.2
833,813 - -0.8
833,826 - 1.1
833,829 + -0.1
833,830 - 0.4
833,832 - 0.3
833,836 - 1.5
833,838 + 0.1
833,844 - 0.1
833,853 + 1.4
833,991 + 0.5
834,028 - 0.0
834,448 + 8725 mRNA_357 0.26 -0.5
834,722 - 8725 mRNA_357 0.41 0.3
834,730 + 8725 mRNA_357 0.41 -2.1
834,763 - 8725 mRNA_357 0.43 -0.6
835,177 - 8725 mRNA_357 0.65 -1.7
835,216 + 8725 mRNA_357 0.67 -1.2
835,343 - 8725 mRNA_357 0.74 -1.6
835,499 + 8725 mRNA_357 0.82 -2.1
835,724 - -0.7
835,750 - 0.9
835,759 - -2.9
835,762 - -2.7
835,899 - -0.3
835,901 + 0.4
835,915 + 1.8
835,918 - 2.8
836,049 - 0.0
836,052 + 0.5
836,059 + -1.1
836,070 - 0.5
836,194 + -0.8
836,466 + 8726 mRNA_358 0.17 -0.8