Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_351

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_350: 8718 - K17439 MRPL35 large subunit ribosomal protein L35, at 819201 to 820840 8718 mRNA_351: 8719 - BLAST carbohydrate-binding module family 13 protein [Rhizoc..., at 821227 to 823466 8719 mRNA_352: 8720 - K14298 RAE1, GLE2 mRNA export factor, at 823972 to 825872 8720

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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820,710 - -0.2
820,725 + 0.0
820,729 - 0.1
820,730 - -0.5
820,750 - 1.9
820,865 + 1.7
820,879 - 1.6
820,894 - -1.3
820,899 - -0.8
820,900 + -0.3
820,925 - -1.3
820,925 - 2.1
820,925 + 0.1
820,951 + -0.6
820,960 - -0.1
820,967 - 0.8
820,973 + -0.4
820,992 + -0.7
820,997 - 0.5
820,998 - 0.7
821,013 + 2.0
821,014 - -0.8
821,017 - 0.1
821,019 - 0.9
821,019 + 0.3
821,048 - -0.8
821,055 - -1.9
821,057 + -0.3
821,064 + -0.5
821,071 + -1.5
821,074 + -0.1
821,075 - 0.8
821,182 - 1.6
821,209 + -1.5
821,211 - 2.2
821,213 - -1.3
821,213 - -0.8
821,215 + -0.7
821,222 + -2.3
821,224 - 1.3
821,225 + 1.4
821,367 + -1.1
821,392 + -0.2
821,401 + -0.5
821,415 + -0.6
821,441 - -0.1
821,442 + -0.3
821,443 - 0.2
821,496 + 8719 mRNA_351 0.12 2.1
821,501 - 8719 mRNA_351 0.12 1.0
821,522 + 8719 mRNA_351 0.13 -0.5
821,568 + 8719 mRNA_351 0.15 -0.7
821,623 - 8719 mRNA_351 0.18 0.2
821,819 - 8719 mRNA_351 0.26 -0.4
821,958 - 8719 mRNA_351 0.33 -1.3
821,991 - 8719 mRNA_351 0.34 2.0
822,246 + 8719 mRNA_351 0.45 -1.3
822,486 - 8719 mRNA_351 0.56 -1.3
822,520 + 8719 mRNA_351 0.58 -0.4
823,502 - 1.3
823,571 - 0.4
823,796 - -0.6
823,838 - -0.8
823,981 - -0.3
823,984 + 0.2