Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_346

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_345: 8713 - HMMPfam-Mis12-Mtw1 protein family-PF08202, at 807833 to 810278 8713 mRNA_346: 8714 - KOG3113 Uncharacterized conserved protein, at 810935 to 812073 8714 mRNA_347: 8715 - K01358 clpP, CLPP ATP-dependent Clp protease, protease subunit, at 812263 to 813594 8715

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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810,286 + -1.7
810,289 - -1.6
810,290 - 0.2
810,292 + -0.1
810,313 + -0.4
810,328 - -0.1
810,410 - 0.2
810,436 - 0.6
810,452 + -0.1
810,460 + -1.3
810,461 + -0.3
810,598 - 0.7
810,603 + 0.6
810,614 + 1.5
810,746 - -0.0
810,893 - -1.7
810,900 - 0.3
810,903 + 2.6
811,779 - 8714 mRNA_346 0.74 1.6
811,936 + 8714 mRNA_346 0.88 1.2
812,083 + -2.2
812,210 - 1.4
812,408 - 8715 mRNA_347 0.11 1.2
812,431 + 8715 mRNA_347 0.13 1.2
812,504 - 8715 mRNA_347 0.18 0.1
812,505 + 8715 mRNA_347 0.18 -0.7
812,507 + 8715 mRNA_347 0.18 -1.3
812,524 - 8715 mRNA_347 0.20 0.3
812,532 + 8715 mRNA_347 0.20 -0.2
812,535 + 8715 mRNA_347 0.20 -0.7
812,917 - 8715 mRNA_347 0.49 1.2
812,959 - 8715 mRNA_347 0.52 0.0
812,966 + 8715 mRNA_347 0.53 -0.1