Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_343

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_341: 8709 - K00860 cysC adenylylsulfate kinase, at 801326 to 802147 8709 mRNA_342: 8710 - SUPERFAMILY--SSF54285, at 802416 to 802761 8710 mRNA_343: 8711 - HMMPfam-Domain of unknown function (DUF4078)-PF13300, at 802821 to 804087 8711 mRNA_344: 8712 - K00914 PIK3C3, VPS34 phosphatidylinositol 3-kinase, at 804255 to 807496 8712

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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802,107 - -1.3
802,107 - -2.1
802,385 - -3.2
802,387 - -0.3
802,388 + 1.7
802,397 + -0.2
802,398 + -0.2
802,547 - 8710 mRNA_342 0.38 -1.0
802,553 - 8710 mRNA_342 0.40 1.2
802,555 + 8710 mRNA_342 0.40 0.2
802,560 + 8710 mRNA_342 0.42 -1.0
802,700 - 8710 mRNA_342 0.82 0.7
802,704 + 8710 mRNA_342 0.83 -0.6
802,711 - 8710 mRNA_342 0.85 0.6
802,731 + -0.4
802,803 + 0.1
803,141 + 8711 mRNA_343 0.25 1.2
803,437 - 8711 mRNA_343 0.49 -1.7
803,752 + 8711 mRNA_343 0.73 0.7
803,885 - 8711 mRNA_343 0.84 0.6
804,019 - -2.3
804,049 + 0.4
804,149 - -1.8
804,188 - -0.3
804,192 - 0.5
804,342 + -1.4
804,764 - 8712 mRNA_344 0.16 -3.1