Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_340

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_339: 8707 - K01693 hisB imidazoleglycerol-phosphate dehydratase, at 798617 to 799510 8707 mRNA_340: 8708 - KOG1271 Methyltransferases, at 799973 to 801137 8708 mRNA_341: 8709 - K00860 cysC adenylylsulfate kinase, at 801326 to 802147 8709

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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799,536 + -1.2
799,555 - 1.3
799,569 - 0.8
799,575 + 0.7
799,705 - -0.9
799,719 - -0.7
799,861 - 0.4
799,867 - -1.1
800,012 - -0.1
800,012 - -3.0
800,292 + 8708 mRNA_340 0.27 2.3
800,329 - 8708 mRNA_340 0.31 2.1
800,348 + 8708 mRNA_340 0.32 0.3
800,571 + 8708 mRNA_340 0.51 1.0
800,602 - 8708 mRNA_340 0.54 0.8
800,888 - 8708 mRNA_340 0.79 0.5
800,917 + 8708 mRNA_340 0.81 0.8
801,030 - -1.3
801,032 - 0.3
801,036 + 1.6
801,175 - 2.6
801,180 - 0.8
801,182 + -0.6
801,186 - 0.2
801,202 + 0.7
801,323 + 0.7
801,356 + -2.3
801,379 + -0.7
801,467 - 8709 mRNA_341 0.17 -2.8
801,477 - 8709 mRNA_341 0.18 -2.4
801,478 + 8709 mRNA_341 0.18 -0.6
801,479 + 8709 mRNA_341 0.19 -1.2
801,483 - 8709 mRNA_341 0.19 -0.1
801,631 - 8709 mRNA_341 0.37 2.2
801,679 - 8709 mRNA_341 0.43 -0.7
801,684 - 8709 mRNA_341 0.44 -0.2
801,788 - 8709 mRNA_341 0.56 -0.5
801,803 + 8709 mRNA_341 0.58 0.2
801,820 - 8709 mRNA_341 0.60 0.0
802,107 - -1.3
802,107 - -2.1