Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_325

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767858 to 770027 8692 mRNA_325: 8693 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 770334 to 776057 8693 mRNA_326: 8694 - K17983 SHE9 sensitive to high expression protein 9, mitochondrial, at 776267 to 777781 8694

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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770,322 + 0.4
770,330 - 1.9
770,456 + 1.0
770,920 + 8693 mRNA_325 0.10 0.3
771,183 - 8693 mRNA_325 0.15 -2.3
771,326 + 8693 mRNA_325 0.17 0.2
771,331 + 8693 mRNA_325 0.17 1.8
771,504 - 8693 mRNA_325 0.20 -0.6
771,842 - 8693 mRNA_325 0.26 -1.3
771,942 - 8693 mRNA_325 0.28 0.8
772,411 - 8693 mRNA_325 0.36 0.3
772,525 - 8693 mRNA_325 0.38 -1.8
772,538 + 8693 mRNA_325 0.39 -1.5
773,237 + 8693 mRNA_325 0.51 -1.4
773,516 + 8693 mRNA_325 0.56 -0.7
774,089 + 8693 mRNA_325 0.66 0.0
774,267 + 8693 mRNA_325 0.69 1.6
774,279 + 8693 mRNA_325 0.69 -0.1
774,693 + 8693 mRNA_325 0.76 -0.1
774,828 + 8693 mRNA_325 0.79 -0.3
774,932 + 8693 mRNA_325 0.80 -0.4
775,136 - 8693 mRNA_325 0.84 -0.1
775,261 - 8693 mRNA_325 0.86 -0.4
775,269 + 8693 mRNA_325 0.86 2.0
775,425 + 8693 mRNA_325 0.89 -2.0
775,688 - -0.2
776,012 + 0.0
776,136 - -0.4
776,136 - 0.3
776,139 + 1.8
776,146 - -0.7
776,154 - 1.0
776,164 + -2.6
776,170 - 1.4
776,241 - -1.7
776,478 + 8694 mRNA_326 0.14 1.0
777,052 + 8694 mRNA_326 0.52 0.2