Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_315

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_314: 8682 - K13091 RBM39, RNPC2 RNA-binding protein 39, at 749609 to 751814 8682 mRNA_315: 8683 - Hypothetical Protein, at 752039 to 753953 8683 mRNA_316: 8684 - K18802 DUG3 glutamine amidotransferase, at 754275 to 756026 8684

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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751,422 + 8682 mRNA_314 0.82 -0.6
751,689 - -0.7
751,708 - 2.1
751,711 - -0.1
751,713 + 1.1
751,716 + 0.4
751,836 - 0.6
751,838 - 1.4
751,843 - 0.1
751,844 - -0.4
751,849 + -1.4
751,850 - 2.3
751,874 + -0.8
751,875 + 0.4
751,980 + -0.3
751,987 - -0.6
752,009 + -1.1
752,009 - 0.5
752,010 + -2.3
752,031 + -2.1
752,032 - -1.3
752,041 - -1.9
752,049 + -0.4
752,050 + -1.2
752,061 + 0.5
752,067 - 0.2
752,069 + -0.1
752,069 - 0.1
752,081 + -0.2
752,084 + 0.1
752,086 + 0.3
752,088 + 1.1
752,100 + -0.6
752,112 + -0.7
752,123 + -0.1
752,134 + 0.3
752,142 - 0.1
752,157 - -0.3
752,161 + -1.0
752,161 + -1.6
752,162 - -0.1
752,175 - -0.6
752,189 + -0.6
752,191 + 0.6
752,192 + -0.3
752,192 + -0.3
752,212 + 0.2
752,213 - 0.3
752,227 - -0.2
752,272 + 8683 mRNA_315 0.12 -0.5
752,274 - 8683 mRNA_315 0.12 0.2
752,283 + 8683 mRNA_315 0.13 -0.4
752,288 - 8683 mRNA_315 0.13 -0.2
752,293 + 8683 mRNA_315 0.13 -0.2
752,295 - 8683 mRNA_315 0.13 -0.9
752,305 - 8683 mRNA_315 0.14 0.2
752,313 - 8683 mRNA_315 0.14 1.1
752,315 - 8683 mRNA_315 0.14 0.5
752,327 + 8683 mRNA_315 0.15 1.2
752,349 - 8683 mRNA_315 0.16 -0.1
752,354 - 8683 mRNA_315 0.16 0.5
752,362 + 8683 mRNA_315 0.17 -0.1
752,389 + 8683 mRNA_315 0.18 -1.4
752,393 + 8683 mRNA_315 0.18 0.7
752,404 + 8683 mRNA_315 0.19 -1.6
752,416 - 8683 mRNA_315 0.20 -1.9
752,424 + 8683 mRNA_315 0.20 -0.7
752,424 - 8683 mRNA_315 0.20 -1.3
752,444 - 8683 mRNA_315 0.21 -1.8
752,448 + 8683 mRNA_315 0.21 0.6
752,463 + 8683 mRNA_315 0.22 0.4
752,503 - 8683 mRNA_315 0.24 -1.9
752,629 - 8683 mRNA_315 0.31 -0.4
752,662 - 8683 mRNA_315 0.33 -0.8
752,692 - 8683 mRNA_315 0.34 -0.3
752,748 + 8683 mRNA_315 0.37 -0.9
752,874 + 8683 mRNA_315 0.44 0.2
753,201 - 8683 mRNA_315 0.61 0.3
753,324 + 8683 mRNA_315 0.67 0.9
753,345 - 8683 mRNA_315 0.68 -0.4
753,476 - 8683 mRNA_315 0.75 0.5
753,607 - 8683 mRNA_315 0.82 -1.4
753,763 + -0.8
754,049 + -0.2
754,060 + -0.5
754,194 - -2.7
754,208 + 0.1
754,469 - 8684 mRNA_316 0.11 0.8
754,502 - 8684 mRNA_316 0.13 -0.0
754,505 + 8684 mRNA_316 0.13 -3.5
754,652 + 8684 mRNA_316 0.22 0.8
754,764 - 8684 mRNA_316 0.28 -1.3
754,897 - 8684 mRNA_316 0.36 0.6