Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_311

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_311: 8679 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 737521 to 741046 8679 mRNA_312: 8680 - K20103 DDX60 ATP-dependent RNA helicase DDX60, at 741330 to 747566 8680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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736,621 + 1.6
736,621 - -0.1
736,662 - -0.5
736,747 + 2.7
736,766 + -0.9
736,936 - -0.3
736,988 + 1.3
737,567 - -1.7
737,986 - 8679 mRNA_311 0.13 -0.3
738,594 + 8679 mRNA_311 0.30 0.2
738,727 - 8679 mRNA_311 0.34 0.0
738,775 - 8679 mRNA_311 0.36 -0.2
738,776 + 8679 mRNA_311 0.36 0.0
739,001 + 8679 mRNA_311 0.42 -0.6
739,316 - 8679 mRNA_311 0.51 -2.1
739,343 - 8679 mRNA_311 0.52 1.8
739,346 + 8679 mRNA_311 0.52 -2.1
739,478 - 8679 mRNA_311 0.56 0.2
739,615 + 8679 mRNA_311 0.59 0.1
739,808 + 8679 mRNA_311 0.65 1.1
740,055 + 8679 mRNA_311 0.72 -0.2
740,190 + 8679 mRNA_311 0.76 0.9
740,440 - 8679 mRNA_311 0.83 0.8
740,467 - 8679 mRNA_311 0.84 0.2
740,595 - 8679 mRNA_311 0.87 -1.3
740,926 - 0.1
740,930 - -0.2
741,064 - 3.9
741,064 - -0.2
741,066 - -0.5
741,067 - -0.4
741,068 - 1.1
741,085 + -1.0
741,325 - -1.6
741,330 - -1.2
741,331 - 1.7
741,342 + -0.2
741,350 - 0.8
741,350 - 0.4
741,352 - -0.3
741,357 + 0.7
741,359 - -0.2
741,361 + 0.6
741,366 + -0.8