Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_288

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_287: 8655 - KOG1861 Leucine permease transcriptional regulator, at 681999 to 683854 8655 mRNA_288: 8656 - K00521 E1.16.1.7 ferric-chelate reductase, at 684049 to 686611 8656 mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686748 to 688788 8657

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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683,815 - -0.2
683,823 - -2.3
684,270 - -0.3
684,395 - 8656 mRNA_288 0.13 -0.4
684,551 - 8656 mRNA_288 0.20 0.4
684,705 - 8656 mRNA_288 0.26 0.9
684,877 + 8656 mRNA_288 0.32 -0.8
684,983 + 8656 mRNA_288 0.36 -0.4
685,561 - 8656 mRNA_288 0.59 -0.7
685,562 + 8656 mRNA_288 0.59 -0.3
685,657 + 8656 mRNA_288 0.63 -0.9
685,993 - 8656 mRNA_288 0.76 1.4
686,314 + 8656 mRNA_288 0.88 -0.6
686,419 + -0.4
686,439 - 0.3
686,574 - -0.3
686,581 - -0.1
686,587 + 2.3
686,606 + -0.2
686,607 - -1.5
686,740 - -0.6
686,742 + -2.3
686,743 - -1.1
686,751 - -1.0
686,884 + -2.6
686,893 - -0.5
687,066 - 8657 mRNA_289 0.16 1.3
687,197 + 8657 mRNA_289 0.22 0.1