Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_272

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_271: 8639 - K11262 ACACA acetyl-CoA carboxylase / biotin carboxylase 1, at 646438 to 653784 8639 mRNA_272: 8640 - KOG4178 Soluble epoxide hydrolase, at 654316 to 655397 8640 mRNA_273: 8641 - K15174 PAF1 RNA polymerase II-associated factor 1, at 655778 to 657591 8641

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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653,818 + 2.2
653,832 - 0.8
653,978 - -2.6
654,012 + 0.2
654,080 - 1.0
654,087 + -2.0
654,087 + -1.9
654,109 - -0.4
654,115 + -1.7
654,125 + 1.6
654,125 + -1.9
654,131 - -0.4
654,172 - 1.5
654,248 - 0.1
654,339 - 1.0
654,421 - -0.1
654,521 + 8640 mRNA_272 0.19 -1.5
654,550 - 8640 mRNA_272 0.22 -1.0
654,863 - 8640 mRNA_272 0.51 -0.4
655,441 - -1.7
655,580 + 0.5
655,583 + 0.8
655,586 - -2.5
655,597 - 2.1
655,603 + -0.0
655,603 + -0.0
655,603 + -0.2
655,605 + -1.0
655,607 + 0.6
655,609 - -1.3
655,610 + 0.9
655,612 + -1.6
655,623 + 1.7
655,725 - 0.2
655,762 + 1.9
655,768 + -0.2
655,768 + 0.2
656,313 + 8641 mRNA_273 0.29 -1.0