Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_259

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_258: 8626 - HMMPfam-Eukaryotic protein of unknown function (DUF1764)-PF08576, at 621201 to 621954 8626 mRNA_259: 8627 - HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356, at 622490 to 625658 8627 mRNA_260: 8628 - KOG2534 DNA polymerase IV (family X), at 625910 to 627593 8628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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621,987 - -1.3
622,007 - 0.6
622,143 - -0.2
622,144 - -0.1
622,150 - 0.5
622,153 + -2.8
622,313 - -0.1
622,316 + 0.3
622,423 + 0.6
622,445 + 0.5
622,455 + 0.7
622,715 - 1.0
623,273 + 8627 mRNA_259 0.25 0.1
623,435 + 8627 mRNA_259 0.30 1.4
624,180 - 8627 mRNA_259 0.53 -2.0
624,224 + 8627 mRNA_259 0.55 0.6
625,752 + -0.5
625,771 - -0.5
625,779 - 0.4
625,784 - -1.0
625,785 + 0.8
625,826 - 0.8
625,835 - -1.0
625,835 + 0.7
625,842 - 0.0
625,847 - -0.4
625,847 + 0.1
625,851 - -1.3
625,858 - -1.5
625,858 - 1.1
625,884 + 0.4
626,007 - -2.5
626,579 + 8628 mRNA_260 0.40 0.1