Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_225

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_224: 8592 - K07300 chaA, CAX Ca2+-H+ antiporter, at 554235 to 556538 8592 mRNA_225: 8593 - KOG0619 FOG Leucine rich repeat, at 556962 to 559070 8593 mRNA_226: 8594 - KOG2861 Uncharacterized conserved protein, at 559154 to 560792 8594

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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556,428 - 0.1
556,431 + -0.4
556,459 - 0.3
556,737 - -0.2
556,740 + -0.5
556,741 + 4.0
556,744 - -1.0
556,745 + 0.3
556,745 + 0.1
556,746 - 2.0
556,764 - -1.2
556,766 + -0.2
556,769 - 0.1
556,770 + 0.7
556,793 - 1.1
556,924 - 0.2
556,946 - -0.4
556,981 + 0.5
557,952 - 8593 mRNA_225 0.47 -0.8
558,134 - 8593 mRNA_225 0.56 -1.3
558,406 + 8593 mRNA_225 0.68 -0.0
558,443 + 8593 mRNA_225 0.70 -1.5
558,954 - 1.2
559,253 - 1.4
559,275 + -0.1
559,300 + -0.7
559,528 - 8594 mRNA_226 0.23 -0.7
559,694 + 8594 mRNA_226 0.33 0.3
559,701 + 8594 mRNA_226 0.33 0.1
559,855 + 8594 mRNA_226 0.43 -2.0