Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_223

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_222: 8590 - K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1, at 547787 to 548767 8590 mRNA_223: 8591 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 548978 to 553115 8591

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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548,785 - 2.0
548,797 + -0.7
548,809 + 1.4
548,827 + -0.2
549,522 + 8591 mRNA_223 0.13 1.0
549,685 - 8591 mRNA_223 0.17 -0.4
549,754 + 8591 mRNA_223 0.19 0.3
549,828 + 8591 mRNA_223 0.21 -0.2
550,224 + 8591 mRNA_223 0.30 -1.0
550,308 - 8591 mRNA_223 0.32 0.1
550,417 + 8591 mRNA_223 0.35 0.0
550,551 - 8591 mRNA_223 0.38 0.1
550,574 - 8591 mRNA_223 0.39 2.9
550,905 + 8591 mRNA_223 0.47 1.5
550,981 - 8591 mRNA_223 0.48 0.1
551,135 - 8591 mRNA_223 0.52 0.2
551,325 - 8591 mRNA_223 0.57 0.1
551,581 - 8591 mRNA_223 0.63 0.6
551,733 - 8591 mRNA_223 0.67 1.2
552,168 - 8591 mRNA_223 0.77 -1.4
552,453 - 8591 mRNA_223 0.84 -0.0
552,765 + 0.1
552,910 + 0.7
552,950 - 1.1
553,042 - 0.2
553,211 + 1.6
553,253 + 0.3
553,271 - -1.8
553,273 - 0.2
553,862 - 1.9
553,866 + 0.0
553,869 + -0.2
553,884 + 0.0
553,884 + -0.1
553,890 + -0.8
553,960 - -0.7