Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_202

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_201: 8569 - K00294 E1.2.1.88 1-pyrroline-5-carboxylate dehydrogenase, at 492772 to 495021 8569 mRNA_202: 8570 - HMMPfam-Frequency clock protein-PF09421, at 495941 to 499437 8570 mRNA_203: 8571 - SUPERFAMILY--SSF51197, at 499764 to 500298 8571 mRNA_204: 8572 - Hypothetical Protein, at 500316 to 500871 8572

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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495,030 + -0.4
495,125 - -0.9
495,147 - -0.1
495,152 + -0.2
495,155 + 1.7
495,155 - -0.7
495,157 - -1.0
495,159 - -0.0
495,162 + -0.9
495,162 + -0.6
495,168 - -0.9
495,169 - 2.4
495,177 - 1.6
495,179 + 1.6
495,180 - -1.4
495,181 + -0.2
495,181 + 1.1
495,182 + -0.6
495,182 + 2.9
495,183 + -1.0
495,186 - 1.6
495,189 + 1.7
495,192 + 0.8
495,201 - 0.2
495,209 + -1.5
495,247 + 1.5
495,495 - -0.6
495,505 - 0.1
496,356 - 8570 mRNA_202 0.12 -0.4
496,374 + 8570 mRNA_202 0.12 1.7
496,508 - 8570 mRNA_202 0.16 0.7
496,546 - 8570 mRNA_202 0.17 0.1
496,698 + 8570 mRNA_202 0.22 -0.2
497,018 - 8570 mRNA_202 0.31 -1.2
497,038 - 8570 mRNA_202 0.31 0.2
497,054 - 8570 mRNA_202 0.32 -1.2
497,286 - 8570 mRNA_202 0.38 2.5
497,481 + 8570 mRNA_202 0.44 -0.3
497,656 + 8570 mRNA_202 0.49 0.1
497,926 + 8570 mRNA_202 0.57 -0.3
498,047 - 8570 mRNA_202 0.60 -0.6
498,779 + 8570 mRNA_202 0.81 -0.7
498,916 - 8570 mRNA_202 0.85 -0.1
498,939 + 8570 mRNA_202 0.86 0.4
499,071 - 8570 mRNA_202 0.90 0.4
499,072 + 8570 mRNA_202 0.90 0.9
499,074 + 8570 mRNA_202 0.90 0.3
499,082 - 8570 mRNA_202 0.90 0.4
499,085 + 8570 mRNA_202 0.90 -1.5
499,186 + -1.4
499,198 + -0.4
499,215 - -0.7
499,221 - 0.0
499,224 - 0.8
499,236 + -0.1
499,238 - -0.1
499,240 + 0.3
499,360 - 0.0
499,369 - 0.2
499,379 + 0.2
499,380 + 0.7
499,382 - 0.4
499,385 + 0.7
499,386 + -1.7
499,500 - -0.8
499,503 + -0.2
499,506 - 0.1
499,516 - 0.5
499,517 - 0.1
499,520 + -0.4
499,523 - 1.4
499,526 + 1.0
499,536 + -2.9
499,538 + 0.5
499,666 - -1.5
499,669 - 0.3
499,813 - -0.7
499,857 + 8571 mRNA_203 0.17 0.9
499,958 + 8571 mRNA_203 0.36 -1.0
500,100 + 8571 mRNA_203 0.63 -0.1
500,110 + 8571 mRNA_203 0.65 1.2
500,274 - -0.6
500,401 - 8572 mRNA_204 0.15 1.5
500,425 - 8572 mRNA_204 0.20 -0.6