Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_185

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_184: 8552 - KOG1286 Amino acid transporters, at 446665 to 448836 8552 mRNA_185: 8553 - K11874 UBP16 ubiquitin carboxyl-terminal hydrolase 16, at 449151 to 451288 8553 mRNA_186: 8554 - Hypothetical Protein, at 451676 to 453998 8554

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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448,592 - 8552 mRNA_184 0.89 -0.1
448,617 - 8552 mRNA_184 0.90 -0.4
448,843 - 0.8
449,036 - -0.4
449,038 - -0.4
449,042 + 1.1
449,043 + -2.9
449,044 - 0.5
449,051 - 1.5
449,082 + 0.6
449,090 + 1.3
449,091 - -1.1
449,105 + -1.3
449,113 + -3.5
449,139 + -0.5
449,269 - 1.0
449,296 - 0.2
449,298 + -3.5
449,557 - 8553 mRNA_185 0.19 1.9
449,846 - 8553 mRNA_185 0.33 0.2
450,281 - 8553 mRNA_185 0.53 0.2
450,282 - 8553 mRNA_185 0.53 -0.2
450,434 - 8553 mRNA_185 0.60 0.2
450,567 - 8553 mRNA_185 0.66 -0.2
450,612 + 8553 mRNA_185 0.68 0.2
451,058 - 8553 mRNA_185 0.89 -0.1
451,324 - 0.5
451,326 + -1.0
451,338 + -0.3
451,784 - -0.1