Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_184

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_183: 8551 - KOG4463 Uncharacterized conserved protein, at 445053 to 446538 8551 mRNA_184: 8552 - KOG1286 Amino acid transporters, at 446665 to 448836 8552 mRNA_185: 8553 - K11874 UBP16 ubiquitin carboxyl-terminal hydrolase 16, at 449151 to 451288 8553

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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445,983 + 8551 mRNA_183 0.63 -1.1
445,989 - 8551 mRNA_183 0.63 -0.6
446,748 - -1.0
446,983 + 8552 mRNA_184 0.15 0.3
447,285 + 8552 mRNA_184 0.29 2.4
447,332 + 8552 mRNA_184 0.31 0.3
447,873 - 8552 mRNA_184 0.56 0.6
448,034 + 8552 mRNA_184 0.63 -1.7
448,592 - 8552 mRNA_184 0.89 -0.1
448,617 - 8552 mRNA_184 0.90 -0.4
448,843 - 0.8
449,036 - -0.4
449,038 - -0.4
449,042 + 1.1
449,043 + -2.9
449,044 - 0.5
449,051 - 1.5
449,082 + 0.6
449,090 + 1.3
449,091 - -1.1
449,105 + -1.3
449,113 + -3.5
449,139 + -0.5
449,269 - 1.0
449,296 - 0.2
449,298 + -3.5
449,557 - 8553 mRNA_185 0.19 1.9