Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_150

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_149: 8517 - Hypothetical Protein, at 374872 to 375333 8517 mRNA_150: 8518 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 375753 to 378108 8518 mRNA_151: 8519 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 379065 to 379994 8519

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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374,759 - -0.4
374,820 + 3.1
374,824 - 1.8
374,942 - 8517 mRNA_149 0.15 -0.3
374,983 + 8517 mRNA_149 0.24 -0.6
375,100 + 8517 mRNA_149 0.49 0.2
375,131 + 8517 mRNA_149 0.56 0.1
375,138 + 8517 mRNA_149 0.58 -0.2
375,140 + 8517 mRNA_149 0.58 2.3
375,249 + 8517 mRNA_149 0.82 -0.1
375,258 + 8517 mRNA_149 0.84 0.2
376,011 + 8518 mRNA_150 0.11 -0.3
376,300 - 8518 mRNA_150 0.23 0.1
376,896 + 8518 mRNA_150 0.49 -1.0
377,138 - 8518 mRNA_150 0.59 -0.7
377,142 - 8518 mRNA_150 0.59 0.4
377,304 - 8518 mRNA_150 0.66 1.4
377,442 - 8518 mRNA_150 0.72 -0.7
377,586 + 8518 mRNA_150 0.78 -0.7
377,903 - -0.8
378,023 - 0.5
378,076 - 1.1
378,289 - -0.3
378,324 - -3.1
378,327 + 2.7
378,428 + -0.4
378,443 - -0.7
378,465 + 0.2
378,468 - -1.0
378,500 + -0.9
378,610 - -1.2
378,611 - -0.5
378,613 - 1.4
378,614 + -0.8
378,614 - -0.8
378,616 + 0.2
378,618 + 0.8
378,619 - 0.5
378,624 + -0.4
378,629 - -1.2
378,639 - 0.4
378,658 + 0.2
378,663 - -0.1
378,759 - -0.0
378,763 + -1.0
378,769 + -0.7
378,794 - 0.3
378,797 - -0.1
378,797 - 1.9
378,799 - -0.4
378,800 + 1.5
378,804 + 1.6
378,808 + -0.4
378,812 + 0.6
378,813 - 1.2
378,825 + 2.3
378,827 - -1.6
378,829 - -2.0
378,831 - 0.3
378,875 + -0.0
378,954 - -0.9
378,957 - -1.2
378,959 - -1.0
378,994 + 1.2
378,995 - -0.6