Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_147

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_146: 8514 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 367275 to 368042 8514 mRNA_147: 8515 - K20120 BIN3 bridging integrator 3, at 368683 to 371935 8515 mRNA_148: 8516 - KOG0254 Predicted transporter (major facilitator superfamily), at 372141 to 374463 8516

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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368,252 - 0.0
368,256 + 0.1
368,266 - 0.5
368,390 - -0.6
368,394 - -0.7
368,411 - -0.9
368,412 - -1.0
368,413 + -1.0
368,455 + -0.1
368,583 - 1.7
368,699 - 1.2
368,710 - 0.8
368,725 - -0.3
369,151 - 8515 mRNA_147 0.14 -0.1
369,618 + 8515 mRNA_147 0.29 1.5
369,636 + 8515 mRNA_147 0.29 -0.3
369,733 - 8515 mRNA_147 0.32 0.1
369,749 + 8515 mRNA_147 0.33 0.2
371,848 + -0.2
372,102 - 0.2
372,109 - -2.1
372,152 - -0.1
372,245 - 0.6
372,314 + 1.5
372,754 + 8516 mRNA_148 0.26 -0.3
372,778 + 8516 mRNA_148 0.27 -2.0
372,838 - 8516 mRNA_148 0.30 -1.0
372,849 + 8516 mRNA_148 0.30 -0.7
372,850 - 8516 mRNA_148 0.31 -1.3
372,909 + 8516 mRNA_148 0.33 -1.8