Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_144

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358360 to 365387 8512 mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365672 to 367146 8513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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357,702 + 8511 mRNA_143 0.87 0.2
357,818 - -0.7
357,821 - 0.0
357,848 - 1.3
357,851 - 0.1
357,968 + 0.1
357,976 + 0.6
357,977 - -1.3
357,987 - -0.5
357,987 + 0.8
357,994 + 0.2
357,997 - -0.6
358,000 - 0.4
358,000 - 0.4
358,005 - 0.5
358,005 - 1.5
358,006 - -1.1
358,006 + 0.0
358,079 - -0.9
358,123 - 1.5
358,126 - -0.3
358,131 - -0.4
358,133 - 0.7
358,133 - -0.6
358,134 - -0.9
358,141 + -0.6
358,151 + 1.6
358,156 + 0.3
358,157 + -0.8
358,157 + -2.5
358,161 + 0.9
358,254 + 0.8
358,281 - -0.1
358,290 - 0.1
358,314 + -0.3
358,432 - -1.9
358,470 - -3.3
358,513 + -1.9
358,604 - -1.1
358,609 + 0.1
358,627 - 1.2
358,640 + -0.6
358,789 + -1.6
359,212 + 8512 mRNA_144 0.12 0.2
359,509 - 8512 mRNA_144 0.16 0.5
359,921 - 8512 mRNA_144 0.22 0.6
360,046 - 8512 mRNA_144 0.24 -0.5
360,355 + 8512 mRNA_144 0.28 1.0
360,470 - 8512 mRNA_144 0.30 -2.7
360,491 + 8512 mRNA_144 0.30 -2.1
360,492 - 8512 mRNA_144 0.30 2.4
360,657 - 8512 mRNA_144 0.33 1.3
361,622 + 8512 mRNA_144 0.46 -1.6
361,839 - 8512 mRNA_144 0.50 0.0
361,956 + 8512 mRNA_144 0.51 -0.8
361,962 + 8512 mRNA_144 0.51 1.9
362,349 + 8512 mRNA_144 0.57 -0.6
362,496 - 8512 mRNA_144 0.59 -0.4
362,591 - 8512 mRNA_144 0.60 -0.2
362,625 + 8512 mRNA_144 0.61 0.2
362,930 - 8512 mRNA_144 0.65 0.2
362,989 - 8512 mRNA_144 0.66 0.1
362,990 - 8512 mRNA_144 0.66 -1.6
363,040 - 8512 mRNA_144 0.67 -2.2
363,099 - 8512 mRNA_144 0.67 1.2
363,249 - 8512 mRNA_144 0.70 0.8
363,970 + 8512 mRNA_144 0.80 -2.5
364,014 + 8512 mRNA_144 0.80 1.2
364,443 + 8512 mRNA_144 0.87 1.3
364,446 + 8512 mRNA_144 0.87 1.5
364,591 + 8512 mRNA_144 0.89 -0.6
364,603 + 8512 mRNA_144 0.89 -0.6
365,192 + 0.3
365,197 + -0.6
365,314 + -0.3
365,440 + 0.4
365,465 - 1.5
365,472 - -0.6
365,517 + 0.5
365,617 + 1.4
365,631 + -1.1
365,759 - 1.4
365,759 - 2.3
365,766 + -1.5