Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_143

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358360 to 365387 8512

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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355,374 - 1.4
355,403 - 0.1
355,418 - -0.4
355,442 - -0.6
355,531 + -0.4
355,647 + 0.2
355,755 - 0.7
355,785 + 1.7
355,804 + -2.3
356,035 + 1.0
356,179 - 0.2
356,187 - 0.2
356,537 - 8511 mRNA_143 0.21 -0.3
356,609 - 8511 mRNA_143 0.25 2.4
356,663 + 8511 mRNA_143 0.28 0.8
356,682 + 8511 mRNA_143 0.29 -1.0
357,702 + 8511 mRNA_143 0.87 0.2
357,818 - -0.7
357,821 - 0.0
357,848 - 1.3
357,851 - 0.1
357,968 + 0.1
357,976 + 0.6
357,977 - -1.3
357,987 - -0.5
357,987 + 0.8
357,994 + 0.2
357,997 - -0.6
358,000 - 0.4
358,000 - 0.4
358,005 - 0.5
358,005 - 1.5
358,006 - -1.1
358,006 + 0.0
358,079 - -0.9
358,123 - 1.5
358,126 - -0.3
358,131 - -0.4
358,133 - 0.7
358,133 - -0.6
358,134 - -0.9
358,141 + -0.6
358,151 + 1.6
358,156 + 0.3
358,157 + -0.8
358,157 + -2.5
358,161 + 0.9
358,254 + 0.8
358,281 - -0.1
358,290 - 0.1
358,314 + -0.3
358,432 - -1.9
358,470 - -3.3
358,513 + -1.9
358,604 - -1.1
358,609 + 0.1
358,627 - 1.2
358,640 + -0.6
358,789 + -1.6