Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_137

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326050 to 327675 8504 mRNA_137: 8505 - SUPERFAMILY--SSF53474, at 328204 to 331764 8505 mRNA_138: 8506 - KOG4473 Uncharacterized membrane protein, at 332077 to 333617 8506

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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327,240 - 8504 mRNA_136 0.73 -1.2
327,253 + 8504 mRNA_136 0.74 0.1
327,259 + 8504 mRNA_136 0.74 -0.7
327,335 - 8504 mRNA_136 0.79 -1.8
327,359 - 8504 mRNA_136 0.81 -0.0
327,504 + 8504 mRNA_136 0.89 0.6
327,565 - -0.9
327,648 + -0.6
327,652 - 0.6
327,662 - 0.6
327,663 + 0.2
327,667 + -2.4
327,669 - 1.6
327,686 + 1.6
327,819 - 0.1
327,980 + -0.3
328,075 - -1.6
328,101 - 1.2
328,107 - -0.5
328,112 + -0.9
328,261 - 0.2
328,275 + -0.2
328,280 + -1.6
328,705 + 8505 mRNA_137 0.14 0.7
329,268 - 8505 mRNA_137 0.30 -1.6
329,755 + 8505 mRNA_137 0.44 -1.0
330,083 - 8505 mRNA_137 0.53 -0.1
330,313 - 8505 mRNA_137 0.59 0.0
330,644 + 8505 mRNA_137 0.69 1.3
331,237 + 8505 mRNA_137 0.85 0.4
331,250 - 8505 mRNA_137 0.86 -0.1
331,321 + 8505 mRNA_137 0.88 0.6
331,637 - -1.5
331,815 - -1.4
331,821 + 0.3
331,832 + -1.9
331,963 + -2.3
331,979 - -1.3
331,990 + 2.2
332,001 + -1.3
332,011 + -0.3
332,137 - 3.3
332,158 + 0.6
332,446 - 8506 mRNA_138 0.24 1.2
332,447 + 8506 mRNA_138 0.24 -0.5
332,450 + 8506 mRNA_138 0.24 0.4
332,692 - 8506 mRNA_138 0.40 -0.4
332,758 + 8506 mRNA_138 0.44 -0.9