Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_103

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_102: 8470 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 247531 to 248783 8470 mRNA_103: 8471 - Hypothetical Protein, at 248905 to 249863 8471 mRNA_104: 8472 - Hypothetical Protein, at 250227 to 251681 8472

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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247,948 - 8470 mRNA_102 0.33 -0.5
248,083 - 8470 mRNA_102 0.44 -0.9
248,427 - 8470 mRNA_102 0.72 -0.0
248,432 - 8470 mRNA_102 0.72 -0.3
248,579 + 8470 mRNA_102 0.84 0.1
248,657 + 8470 mRNA_102 0.90 -1.0
248,664 + -0.9
248,677 + 0.3
248,744 + 0.7
248,752 + -1.1
249,020 - 8471 mRNA_103 0.12 1.0
249,179 - 8471 mRNA_103 0.29 0.9
249,180 - 8471 mRNA_103 0.29 0.2
249,257 - 8471 mRNA_103 0.37 1.1
249,294 + 8471 mRNA_103 0.41 0.8
249,356 + 8471 mRNA_103 0.47 -0.4
249,626 - 8471 mRNA_103 0.75 -0.9
249,667 + 8471 mRNA_103 0.79 1.2
249,692 - 8471 mRNA_103 0.82 1.2
249,740 + 8471 mRNA_103 0.87 1.9
249,768 + 0.1
249,881 - -0.6
249,884 - 1.6
249,912 - 0.5
249,996 - -1.2
250,000 + -0.5
250,001 + -0.3
250,069 - 0.9
250,081 - -0.2
250,090 - 0.3
250,107 + 0.3
250,210 - -1.0
250,230 + -0.6
250,366 - -1.1
250,384 + 8472 mRNA_104 0.11 -1.2
250,458 - 8472 mRNA_104 0.16 0.4
250,484 + 8472 mRNA_104 0.18 -1.2
250,652 + 8472 mRNA_104 0.29 0.5
250,657 - 8472 mRNA_104 0.30 0.7