Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_99

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_98: 8466 - Hypothetical Protein, at 233874 to 234659 8466 mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235594 to 240654 8467 mRNA_100: 8468 - K03686 dnaJ molecular chaperone DnaJ, at 241337 to 243142 8468

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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234,600 + 1.6
234,613 + -1.5
234,733 - -0.4
234,750 + -0.0
234,765 + -0.2
234,773 - 0.5
234,904 - -0.2
234,909 + -3.3
234,911 - -0.2
234,914 + -0.8
234,915 - -1.5
234,919 + -1.2
234,920 + 0.0
234,923 - -1.1
234,926 + -2.0
234,926 + -0.3
234,927 - 0.2
234,932 - -0.7
234,935 + -1.6
234,936 + -1.2
234,940 - -0.7
234,941 + 0.7
234,941 + 1.1
234,942 + -0.0
234,943 + 0.1
234,970 - 0.9
234,984 - -1.4
234,985 + 0.1
234,991 - -0.6
234,999 + 0.4
234,999 + 0.0
235,005 + 0.3
235,007 - 1.9
235,011 - -0.7
235,013 + -0.1
235,016 - -0.2
235,016 - 2.1
235,019 - -2.2
235,019 + 0.4
235,024 + 2.0
235,026 - -0.4
235,040 - -0.7
235,041 + -0.2
235,048 - 0.1
235,057 - -0.8
235,061 - -1.3
235,062 - -1.3
235,072 - -0.7
235,077 + 0.7
235,078 - 1.2
235,080 - 0.3
235,080 - 0.7
235,081 + -0.1
235,081 + 1.2
235,085 - 0.5
235,085 - 1.2
235,089 - 0.7
235,091 + -1.3
235,092 - -1.4
235,096 + 1.4
235,104 + 1.2
235,135 - -1.2
235,141 - 1.6
235,141 - -0.3
235,144 - 1.0
235,146 + 1.2
235,147 + -0.4
235,147 - 2.4
235,148 - 0.5
235,150 - 1.1
235,152 - 1.6
235,152 + 0.1
235,160 + 0.2
235,165 - 0.0
235,183 + 0.9
235,195 - -0.2
235,206 - -0.6
235,211 + 0.9
235,211 + 0.1
235,212 + -1.8
235,259 - 0.4
235,260 - -0.6
235,276 - 3.0
235,277 - 0.2
235,279 - -1.8
235,280 + -2.6
235,280 - -0.3
235,281 + 0.7
235,281 + -0.2
235,290 - 0.4
235,291 - -1.4
235,292 + 0.4
235,293 - -0.1
235,297 - 1.3
235,299 - 0.4
235,301 - -0.9
235,302 + -0.2
235,308 - 1.5
235,308 + -0.1
235,311 - -0.1
235,314 - 1.4
235,470 + 0.6
235,486 - 0.7
235,495 + 1.2
235,616 - 1.2
235,741 + 0.2
235,757 + 0.5
235,765 + 0.8
235,808 + 1.0
235,842 + 0.3
236,365 + 8467 mRNA_99 0.15 -1.1
236,378 + 8467 mRNA_99 0.15 -1.0
236,494 - 8467 mRNA_99 0.18 0.0
236,669 - 8467 mRNA_99 0.21 -0.6
236,808 - 8467 mRNA_99 0.24 -0.0
237,418 + 8467 mRNA_99 0.36 0.4
237,609 + 8467 mRNA_99 0.40 0.6
237,943 + 8467 mRNA_99 0.46 1.2
238,162 - 8467 mRNA_99 0.51 -0.3
238,262 + 8467 mRNA_99 0.53 -0.7
238,265 - 8467 mRNA_99 0.53 0.3
238,316 - 8467 mRNA_99 0.54 0.1
238,483 - 8467 mRNA_99 0.57 -0.2
238,496 + 8467 mRNA_99 0.57 -0.2
238,615 + 8467 mRNA_99 0.60 0.1
239,423 - 8467 mRNA_99 0.76 -2.5
239,463 + 8467 mRNA_99 0.76 0.6
240,028 + 8467 mRNA_99 0.88 -0.1
240,232 - 1.3
240,479 - -0.3
240,747 + -1.8