Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_88

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_87: 8455 - BLAST HAP1, N-terminal [Xanthophyllomyces dendrorhous], at 207025 to 210193 8455 mRNA_88: 8456 - K17361 ACOT9 acyl-coenzyme A thioesterase 9, at 210659 to 212272 8456

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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209,692 - 8455 mRNA_87 0.84 0.1
209,713 + 8455 mRNA_87 0.85 0.0
209,740 - 8455 mRNA_87 0.86 1.6
209,807 + 8455 mRNA_87 0.88 1.9
209,891 + 0.7
210,158 - -0.1
210,162 + 1.1
210,167 - -2.5
210,173 - 0.1
210,176 + -0.0
210,179 - 3.2
210,179 - -0.3
210,307 + 0.4
210,320 - 1.9
210,321 - 2.5
210,337 + -2.1
210,345 + -2.7
210,368 - 0.3
210,399 - -1.2
210,407 - 0.5
210,418 + 0.6
210,431 + -1.1
210,439 - -0.7
210,449 - -0.7
210,453 - 0.7
210,460 - -0.2
210,476 - 0.6
210,487 + 1.6
210,546 - 0.2
210,568 + -2.5
210,579 + -1.4
210,593 - -0.1
210,600 + -1.8
210,603 - -0.6
210,604 + 0.1
210,610 - 2.9
210,628 + 1.3
210,630 + -0.2
210,637 + 1.5
210,639 - 1.3
210,639 + -2.8
210,645 + 2.1
210,654 - -0.2
210,662 + -1.1
210,663 + 0.4
210,672 + 0.8
210,684 - 0.9
210,772 + 0.4
210,794 + 0.9
210,797 - 1.2
211,078 + 8456 mRNA_88 0.26 0.2
211,503 + 8456 mRNA_88 0.52 -1.5
211,523 + 8456 mRNA_88 0.54 -0.8
211,771 - 8456 mRNA_88 0.69 -1.6
211,778 + 8456 mRNA_88 0.69 1.9
212,220 + -0.2
212,226 + 1.6
212,375 - -0.9
212,410 - -0.1
212,494 + 0.3
212,502 - 0.7
212,504 - -1.0
212,508 + -0.4
212,512 - 1.9
212,524 + -1.4
212,544 - 0.8
212,623 + 0.7
212,623 + -2.4
212,641 + -0.8
212,645 + 0.4
212,652 + 0.2
212,652 - -1.0
212,658 + -0.7
212,663 - -0.0
212,669 + -2.1
212,670 - 0.1
212,677 - -1.1
212,695 - 0.4
212,695 + -0.1
212,801 - 1.4
212,807 + -1.2
212,811 + -1.0
212,821 + -2.7
212,835 - -0.6
212,844 - 0.6
212,853 + -1.1
212,855 + 2.0
212,873 + 0.7
212,875 - -0.8
212,880 + -1.1
212,880 + -2.2
212,900 - 1.5
212,901 - -1.0
212,906 - 0.9
212,933 - -0.7
212,940 - 3.6
212,950 - 1.0
212,961 - 0.1
212,983 + 1.0
213,005 - 1.4
213,025 - -0.5
213,029 + 1.1
213,039 - -0.6
213,043 + -1.1
213,053 + -2.1
213,059 - 0.8
213,066 - 2.6
213,067 + 0.4
213,073 + -0.1
213,074 + -0.7
213,099 + -1.3
213,110 - -1.2
213,112 + -2.5
213,118 + 0.0
213,122 + 0.4
213,125 - 0.4
213,126 + -1.5
213,126 + 1.3
213,127 - -0.9
213,139 + 2.3
213,141 - -1.6
213,156 + -0.4
213,158 + -1.6
213,159 + -0.5
213,165 - 0.9
213,168 - 1.4
213,175 - 1.0