Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_73

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_73: 8441 - K00698 CHS1 chitin synthase, at 169827 to 173814 8441 mRNA_74: 8442 - KOG3600 Thyroid hormone receptor-associated protein complex, subunit TRAP240, at 174089 to 180350 8442

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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168,846 + 0.2
168,861 - -1.0
168,864 - -1.8
168,906 + 0.6
168,935 - -1.5
169,155 - -0.9
169,182 - -1.5
169,202 + 0.5
169,356 + 0.5
169,358 - 1.0
169,648 - -0.1
169,668 - 2.0
169,790 - -0.6
169,840 + -1.3
170,219 + -0.6
170,253 - 8441 mRNA_73 0.11 0.1
170,901 - 8441 mRNA_73 0.27 0.7
171,079 + 8441 mRNA_73 0.31 -0.1
171,383 - 8441 mRNA_73 0.39 0.0
171,551 - 8441 mRNA_73 0.43 -3.0
172,023 - 8441 mRNA_73 0.55 0.7
172,280 - 8441 mRNA_73 0.62 0.1
172,438 - 8441 mRNA_73 0.65 -0.9
172,739 + 8441 mRNA_73 0.73 -0.6
172,751 - 8441 mRNA_73 0.73 0.1
172,813 - 8441 mRNA_73 0.75 -0.2
172,962 + 8441 mRNA_73 0.79 -1.3
173,174 - 8441 mRNA_73 0.84 0.7
173,424 - -3.1
173,424 + -0.0
173,518 - 1.8
173,553 - -2.1
173,837 + -1.6
173,862 + 2.1
174,086 - 1.9
174,096 - 0.1
174,298 + -0.7
174,298 + -0.2
174,532 + -0.5
174,678 + -0.4