Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_69

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158685 to 163751 8436 mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163948 to 165826 8437 mRNA_70: 8438 - HMMPfam-Membrane-associating domain-PF01284, at 166029 to 167085 8438

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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163,919 + -1.4
163,920 + 0.3
164,051 - 0.1
164,314 + 8437 mRNA_69 0.19 0.9
164,349 - 8437 mRNA_69 0.21 -0.1
164,908 + 8437 mRNA_69 0.51 0.5
165,182 - 8437 mRNA_69 0.66 -2.9
165,201 + 8437 mRNA_69 0.67 -0.9
165,467 + 8437 mRNA_69 0.81 0.4
165,660 - -0.1
165,771 + -1.6
165,799 + 0.5
165,801 - -0.5
165,832 + 1.2
165,875 - -1.1
165,879 - 0.7
165,882 + 1.0
165,888 - -0.4
165,897 - -0.5
165,899 - 0.0
165,912 - -0.5
165,912 + -0.3
165,926 - 0.5
165,940 + -1.8
165,940 + -1.5
165,942 - -0.3
165,951 - -3.0
165,952 - -0.4
165,952 + -0.1
165,953 + -0.3
165,966 - -0.3
165,967 + 0.3
166,098 + 0.1
166,099 - -0.7
166,103 + -0.9
166,113 - 0.5
166,117 + -2.0
166,117 + -1.9
166,126 + 0.8
166,255 + 8438 mRNA_70 0.21 1.8
166,263 - 8438 mRNA_70 0.22 0.4
166,400 + 8438 mRNA_70 0.35 0.8
166,406 - 8438 mRNA_70 0.36 -0.1