Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_58

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_57: 8425 - K15176 CTR9 RNA polymerase-associated protein CTR9, at 133642 to 138012 8425 mRNA_58: 8426 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 138676 to 140962 8426 mRNA_59: 8427 - Hypothetical Protein, at 141223 to 142116 8427

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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137,847 + 2.9
138,126 - -2.8
138,131 - -2.5
138,147 - 1.0
138,156 + -0.4
138,164 + -0.4
138,186 + 0.4
138,187 - 0.6
138,238 - -1.3
138,293 - -0.3
138,302 - 0.3
138,314 - 1.9
138,322 + 2.1
138,328 + -1.1
138,335 - -0.2
138,461 - -1.1
138,645 + 0.1
138,649 - 0.1
138,661 - -0.5
138,947 + 8426 mRNA_58 0.12 -2.5
139,216 - 8426 mRNA_58 0.24 0.7
139,335 + 8426 mRNA_58 0.29 -0.5
139,369 - 8426 mRNA_58 0.30 -0.2
139,376 + 8426 mRNA_58 0.31 0.1
139,396 + 8426 mRNA_58 0.31 0.6
139,428 - 8426 mRNA_58 0.33 0.7
139,522 + 8426 mRNA_58 0.37 0.8
139,649 - 8426 mRNA_58 0.43 -2.3
139,981 - 8426 mRNA_58 0.57 1.6
140,148 + 8426 mRNA_58 0.64 -0.1
140,276 - 8426 mRNA_58 0.70 1.3
140,436 - 8426 mRNA_58 0.77 0.2
140,440 + 8426 mRNA_58 0.77 1.0
140,545 - 8426 mRNA_58 0.82 1.0
140,593 - 8426 mRNA_58 0.84 0.2
140,696 - 8426 mRNA_58 0.88 -2.5
140,902 + -0.9
141,132 - -0.5
141,177 - 1.1
141,196 + -0.9
141,449 - 8427 mRNA_59 0.25 -3.3
141,460 - 8427 mRNA_59 0.27 1.6
141,509 - 8427 mRNA_59 0.32 -1.1
141,518 - 8427 mRNA_59 0.33 0.2
141,747 + 8427 mRNA_59 0.59 0.7
141,774 + 8427 mRNA_59 0.62 -1.0
141,788 - 8427 mRNA_59 0.63 -0.8
141,818 - 8427 mRNA_59 0.67 2.6
141,824 - 8427 mRNA_59 0.67 -1.4
141,907 - 8427 mRNA_59 0.77 -0.7