Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_47

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111074 to 114249 8414 mRNA_47: 8415 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 114589 to 115599 8415 mRNA_48: 8416 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 116348 to 117395 8416

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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113,624 + 8414 mRNA_46 0.80 2.0
113,665 - 8414 mRNA_46 0.82 -0.6
113,686 - 8414 mRNA_46 0.82 1.6
113,715 - 8414 mRNA_46 0.83 -1.1
113,851 + 8414 mRNA_46 0.87 -3.2
113,858 + 8414 mRNA_46 0.88 0.2
114,191 + 0.4
114,192 + 0.9
114,197 + -1.7
114,265 + -0.2
114,279 + 1.6
114,605 + -0.1
114,855 - 8415 mRNA_47 0.26 -0.1
114,932 + 8415 mRNA_47 0.34 0.7
114,935 - 8415 mRNA_47 0.34 0.4
115,004 + 8415 mRNA_47 0.41 0.6
115,174 - 8415 mRNA_47 0.58 0.1
115,308 + 8415 mRNA_47 0.71 -1.1
115,372 - 8415 mRNA_47 0.77 -0.8
115,609 - 0.3
115,729 + 1.6
115,808 - 1.2
115,835 + 0.3
115,866 - 0.0
115,920 - -0.8
115,921 + -0.3
115,922 - -0.2
115,931 + -0.3
115,945 + -1.7
115,954 - 0.5
115,969 + -0.8
115,972 + 1.0
115,980 - 0.2
115,988 + -0.6
115,994 + 0.6
115,995 - 0.0
115,998 + -0.8
116,003 + 0.2
116,030 + 0.2
116,037 - 0.1
116,040 + -0.7
116,047 - 0.5
116,052 + -0.7
116,081 + 0.1
116,081 + 2.0
116,154 - -0.0
116,154 + 1.2
116,186 + -0.4
116,192 - -1.2
116,198 + 0.3
116,199 + -0.3
116,231 - -0.4
116,235 + -2.5
116,242 + 1.4
116,270 + 0.1
116,376 - 0.1
116,402 - -3.3
116,467 - 8416 mRNA_48 0.11 -1.9
116,564 - 8416 mRNA_48 0.21 1.2