Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_40

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94865 to 95759 8407 mRNA_40: 8408 - Hypothetical Protein, at 96128 to 97227 8408 mRNA_41: 8409 - K03125 TAF1 transcription initiation factor TFIID subunit 1, at 97555 to 101757 8409

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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95,176 - 8407 mRNA_39 0.35 0.5
95,240 - 8407 mRNA_39 0.42 -0.5
95,274 - 8407 mRNA_39 0.46 1.0
95,475 - 8407 mRNA_39 0.68 -0.3
95,528 - 8407 mRNA_39 0.74 1.7
95,566 - 8407 mRNA_39 0.78 1.5
95,645 - 8407 mRNA_39 0.87 0.3
95,648 + 8407 mRNA_39 0.87 -1.6
95,650 - 8407 mRNA_39 0.88 -1.8
95,707 + 1.1
95,713 - 0.8
95,750 + -0.4
95,770 + -0.1
95,809 - -0.2
95,818 - -0.6
95,823 + 0.0
96,060 + 0.9
96,091 - 0.3
96,091 + -1.8
96,109 + -0.6
96,270 - 8408 mRNA_40 0.13 -1.2
96,357 - 8408 mRNA_40 0.21 -1.8
96,366 + 8408 mRNA_40 0.22 0.5
96,378 + 8408 mRNA_40 0.23 -1.9
96,410 - 8408 mRNA_40 0.26 -1.6
96,462 + 8408 mRNA_40 0.30 0.5
96,560 + 8408 mRNA_40 0.39 0.4
96,621 - 8408 mRNA_40 0.45 0.3
96,674 - 8408 mRNA_40 0.50 0.4
96,754 - 8408 mRNA_40 0.57 -1.0
96,912 - 8408 mRNA_40 0.71 -0.5
97,093 - 8408 mRNA_40 0.88 -2.1
97,224 + -1.0