Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_37

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86184 to 90147 8404 mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90908 to 93083 8405 mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93493 to 94436 8406

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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90,062 + 0.3
90,107 - 1.1
90,219 - 1.5
90,236 - -2.2
90,348 + -0.3
90,354 - -1.3
90,359 + 2.1
90,360 + -1.5
90,362 + -0.9
90,372 - -0.9
90,378 - 1.1
90,378 - -0.4
90,390 + 0.5
90,391 + -0.4
90,392 + -0.7
90,393 + 0.1
90,393 - 1.3
90,394 + 0.7
90,395 + 0.2
90,395 + -0.7
90,399 - 2.5
90,401 - 0.9
90,401 + 0.6
90,403 - -0.2
90,403 - 0.3
90,408 + -0.2
90,408 - 1.0
90,409 + 1.6
90,409 - 1.4
90,411 + -0.0
90,411 + 2.7
90,413 + 1.8
90,420 - -1.1
90,422 - -1.0
90,423 + 0.3
90,424 + 0.5
90,425 + 0.3
90,425 + 0.9
90,428 - 0.5
90,437 - -0.0
90,439 - 1.6
90,439 - -0.6
90,439 - 0.9
90,440 - -1.0
90,441 - 0.7
90,442 + 0.6
90,443 - 0.1
90,453 + 0.1
90,454 - 0.8
90,455 - 0.5
90,462 + 0.2
90,471 + 0.7
90,472 - -1.3
90,480 - -1.7
90,496 - -0.8
90,498 - 2.7
90,499 + 0.4
90,501 - -1.5
90,502 + -1.0
90,503 - 0.6
90,503 - -0.8
90,516 - 0.6
90,517 + 1.4
90,517 + 0.3
90,528 + -0.8
90,547 + -0.9
90,556 + -0.1
90,565 - -2.2
90,567 - -0.2
90,574 - 0.1
90,575 + -0.8
90,579 - 2.3
90,587 + 0.6
90,589 - 0.7
90,590 + 0.8
90,591 + -0.4
90,594 - -1.0
90,603 + 1.5
90,620 - -2.0
90,621 - -0.2
90,625 - -1.2
90,629 - 0.0
90,630 + -0.4
90,630 + -0.6
90,630 - -0.0
90,633 - -1.4
90,633 + -1.9
90,636 - 0.1
90,639 - 1.7
90,641 - -0.6
90,643 + -0.8
90,648 - 1.1
90,649 - -0.6
90,652 + -0.1
90,652 - -1.1
90,655 - -0.3
90,660 + -2.2
90,660 - 0.8
90,662 - 0.5
90,667 - 0.1
90,667 - -1.6
90,668 + -0.0
90,670 + -0.6
90,673 - 1.0
90,674 + -0.1
90,682 + -2.3
90,686 - -0.2
90,686 - 1.1
90,694 - 1.5
90,696 + 0.4
90,700 - 1.0
90,701 + 0.4
90,707 + -1.0
90,720 - 0.1
90,809 + -0.0
90,811 - -0.1
90,819 - 0.8
90,839 + -1.5
90,840 + -2.1
90,850 + 0.5
90,861 + 0.3
91,102 + -0.2
91,107 - 0.2
91,127 - 8405 mRNA_37 0.10 -0.9
91,128 + 8405 mRNA_37 0.10 -0.6
91,245 + 8405 mRNA_37 0.15 -0.2
91,278 - 8405 mRNA_37 0.17 -1.6
91,283 + 8405 mRNA_37 0.17 -0.7
91,411 - 8405 mRNA_37 0.23 -0.9
91,423 - 8405 mRNA_37 0.24 0.8
91,436 + 8405 mRNA_37 0.24 0.6
91,443 - 8405 mRNA_37 0.25 0.6
91,443 - 8405 mRNA_37 0.25 -1.0
91,477 - 8405 mRNA_37 0.26 -0.5
91,480 - 8405 mRNA_37 0.26 0.5
91,697 - 8405 mRNA_37 0.36 1.1
91,700 + 8405 mRNA_37 0.36 -0.7
91,715 - 8405 mRNA_37 0.37 0.2
91,718 + 8405 mRNA_37 0.37 -0.2
91,726 - 8405 mRNA_37 0.38 -0.1
91,740 + 8405 mRNA_37 0.38 0.1
91,840 + 8405 mRNA_37 0.43 0.1
91,840 + 8405 mRNA_37 0.43 -1.1
92,005 - 8405 mRNA_37 0.50 -2.5
92,009 - 8405 mRNA_37 0.51 -0.0
92,130 - 8405 mRNA_37 0.56 -0.1
92,142 + 8405 mRNA_37 0.57 0.4
92,274 + 8405 mRNA_37 0.63 -0.0
92,277 - 8405 mRNA_37 0.63 -0.5
92,300 - 8405 mRNA_37 0.64 0.4
92,412 - 8405 mRNA_37 0.69 -0.8
92,688 - 8405 mRNA_37 0.82 1.2
92,822 + 8405 mRNA_37 0.88 -2.4
92,857 - 8405 mRNA_37 0.90 0.4
92,974 + 0.1
93,195 - 2.0
93,285 - -0.4
93,293 + -1.6
93,314 - -1.4
93,315 + -0.7
93,318 + -1.7
93,447 - -0.1
93,455 + 2.8
93,461 + 1.7
93,485 + 1.1
93,512 + -0.7
93,614 + 8406 mRNA_38 0.13 -0.2
93,645 - 8406 mRNA_38 0.16 0.6
93,776 - 8406 mRNA_38 0.30 1.3
93,813 + 8406 mRNA_38 0.34 0.2
93,961 + 8406 mRNA_38 0.50 -0.7
93,965 - 8406 mRNA_38 0.50 0.1
94,027 + 8406 mRNA_38 0.57 -0.9