Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_35

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_34: 8402 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 81530 to 84325 8402 mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84983 to 86013 8403 mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86184 to 90147 8404

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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84,344 + -1.6
84,348 + -0.5
84,391 - -0.4
84,470 + -1.1
84,625 - -0.7
84,639 - -0.5
84,669 - -0.2
84,751 - -0.4
84,771 + 2.8
84,804 - 0.3
84,918 + 2.0
84,943 + -1.8
84,947 - -0.2
85,016 - 0.1
85,016 - -0.1
85,167 - 8403 mRNA_35 0.18 -0.6
85,238 + 8403 mRNA_35 0.25 -1.7
85,339 - 8403 mRNA_35 0.35 1.7
85,394 + 8403 mRNA_35 0.40 -0.1
85,502 + 8403 mRNA_35 0.50 -0.2
85,520 + 8403 mRNA_35 0.52 0.9
85,661 - 8403 mRNA_35 0.66 0.7
85,670 + 8403 mRNA_35 0.67 0.1
85,827 - 8403 mRNA_35 0.82 -1.2
85,833 + 8403 mRNA_35 0.82 -3.3
85,943 - -1.2
85,947 + -1.1
85,985 - 0.2
86,078 - -0.9
86,113 - -0.3
86,148 - 0.8
86,211 - 0.2
86,266 + 0.4
86,389 - -2.1
86,443 + -0.6
86,511 - 0.7
86,538 + 0.9
86,598 + 8404 mRNA_36 0.10 1.1
86,798 + 8404 mRNA_36 0.15 0.7
86,883 + 8404 mRNA_36 0.18 0.5