Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_34

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_33: 8401 - HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371, at 79205 to 81384 8401 mRNA_34: 8402 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 81530 to 84325 8402 mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84983 to 86013 8403

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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80,616 - 8401 mRNA_33 0.65 3.9
80,626 + 8401 mRNA_33 0.65 -1.7
80,666 - 8401 mRNA_33 0.67 0.6
80,977 + 8401 mRNA_33 0.81 -0.3
81,101 + 8401 mRNA_33 0.87 -0.2
81,113 + 8401 mRNA_33 0.88 -0.7
81,114 - 8401 mRNA_33 0.88 -0.1
81,221 - 3.0
81,232 - 1.0
81,251 - 0.8
81,260 - -0.4
81,275 - 1.6
81,278 + -0.8
81,407 - -1.7
82,155 + 8402 mRNA_34 0.22 0.1
83,768 - 8402 mRNA_34 0.80 0.2
84,344 + -1.6
84,348 + -0.5
84,391 - -0.4
84,470 + -1.1
84,625 - -0.7
84,639 - -0.5
84,669 - -0.2
84,751 - -0.4
84,771 + 2.8
84,804 - 0.3
84,918 + 2.0
84,943 + -1.8
84,947 - -0.2
85,016 - 0.1
85,016 - -0.1
85,167 - 8403 mRNA_35 0.18 -0.6
85,238 + 8403 mRNA_35 0.25 -1.7