Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_33

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_32: 8400 - HMMPfam-Pre-rRNA-processing protein TSR2-PF10273, at 78127 to 78849 8400 mRNA_33: 8401 - HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371, at 79205 to 81384 8401 mRNA_34: 8402 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 81530 to 84325 8402

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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78,998 - 0.9
79,008 - 1.5
79,008 + -0.6
79,024 - -1.4
79,034 + -0.6
79,036 + -1.8
79,041 - -1.2
79,042 + 3.0
79,043 + 1.9
79,190 + 2.6
79,324 + -0.1
79,480 + 8401 mRNA_33 0.13 1.2
79,728 - 8401 mRNA_33 0.24 -1.1
80,085 - 8401 mRNA_33 0.40 0.0
80,249 + 8401 mRNA_33 0.48 0.9
80,367 - 8401 mRNA_33 0.53 0.6
80,374 - 8401 mRNA_33 0.54 -1.5
80,616 - 8401 mRNA_33 0.65 3.9
80,626 + 8401 mRNA_33 0.65 -1.7
80,666 - 8401 mRNA_33 0.67 0.6
80,977 + 8401 mRNA_33 0.81 -0.3
81,101 + 8401 mRNA_33 0.87 -0.2
81,113 + 8401 mRNA_33 0.88 -0.7
81,114 - 8401 mRNA_33 0.88 -0.1
81,221 - 3.0
81,232 - 1.0
81,251 - 0.8
81,260 - -0.4
81,275 - 1.6
81,278 + -0.8
81,407 - -1.7
82,155 + 8402 mRNA_34 0.22 0.1