Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_20

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52301 to 54654 8387 mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55031 to 59299 8388 mRNA_21: 8389 - SUPERFAMILY--SSF51045, at 59520 to 60624 8389

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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54,110 + 8387 mRNA_19 0.77 -1.9
54,165 - 8387 mRNA_19 0.79 0.5
54,210 + 8387 mRNA_19 0.81 -0.1
54,466 + -0.1
54,566 + 0.0
54,569 - -0.9
54,595 - -1.4
54,602 - 0.8
54,605 + 1.0
54,629 + -1.4
54,751 - 0.2
54,754 - -0.7
54,754 - 0.8
54,758 - -2.9
54,760 + 0.2
54,761 + -0.8
54,765 - -0.5
54,767 + 1.2
54,768 - -1.5
54,776 - 0.1
54,777 + 0.7
54,777 + -2.0
54,782 + -0.8
54,787 + -1.0
54,913 - 0.3
54,917 - 0.1
54,947 + 0.1
54,947 + 0.2
54,952 - -1.7
55,100 + -0.3
55,379 - 1.1
55,383 + -0.4
55,808 - 8388 mRNA_20 0.18 -1.1
55,866 - 8388 mRNA_20 0.20 -2.0
55,957 - 8388 mRNA_20 0.22 -0.8
56,274 + 8388 mRNA_20 0.29 1.2
56,282 + 8388 mRNA_20 0.29 2.8
56,464 - 8388 mRNA_20 0.34 -0.4
56,564 - 8388 mRNA_20 0.36 -2.0
56,571 + 8388 mRNA_20 0.36 2.3
56,879 + 8388 mRNA_20 0.43 -0.6
56,879 + 8388 mRNA_20 0.43 -0.9
57,308 + 8388 mRNA_20 0.53 0.6
57,526 - 8388 mRNA_20 0.58 2.4
57,580 + 8388 mRNA_20 0.60 0.0
57,592 + 8388 mRNA_20 0.60 -1.6
57,745 + 8388 mRNA_20 0.64 0.2
57,868 - 8388 mRNA_20 0.66 0.1
58,112 + 8388 mRNA_20 0.72 -0.7
58,621 + 8388 mRNA_20 0.84 -2.2
58,761 + 8388 mRNA_20 0.87 0.7
58,774 + 8388 mRNA_20 0.88 -1.0
58,781 - 8388 mRNA_20 0.88 0.6
58,897 + 1.1
59,466 + 0.1
59,533 - 2.2
59,766 - 8389 mRNA_21 0.22 1.8
60,085 + 8389 mRNA_21 0.51 -0.2