Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4: 8372 - K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase, at 10225 to 11839 8372 mRNA_5: 8373 - SUPERFAMILY--SSF51695, at 12047 to 13694 8373 mRNA_6: 8374 - SUPERFAMILY--SSF47676, at 13861 to 19221 8374

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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11,415 - 8372 mRNA_4 0.74 1.4
11,519 - 8372 mRNA_4 0.80 -0.3
11,848 + 1.0
11,850 - 1.1
11,972 + 0.9
12,045 + -0.3
12,157 + 0.8
12,167 - -1.7
12,186 - -2.0
12,190 + -1.8
12,347 - 8373 mRNA_5 0.18 -1.8
12,460 + 8373 mRNA_5 0.25 -1.2
12,560 + 8373 mRNA_5 0.31 -0.6
12,571 + 8373 mRNA_5 0.32 1.1
12,576 - 8373 mRNA_5 0.32 -2.0
12,622 - 8373 mRNA_5 0.35 1.1
12,669 + 8373 mRNA_5 0.38 -1.1
12,747 + 8373 mRNA_5 0.42 0.8
12,854 + 8373 mRNA_5 0.49 0.8
12,856 - 8373 mRNA_5 0.49 -0.4
13,000 + 8373 mRNA_5 0.58 0.9
13,103 - 8373 mRNA_5 0.64 2.1
13,133 - 8373 mRNA_5 0.66 0.2
13,202 + 8373 mRNA_5 0.70 2.5
13,404 + 8373 mRNA_5 0.82 0.1
13,578 + 1.2
13,700 + 0.5
13,752 - -2.6
13,753 + -0.6
13,839 + -1.8
13,938 + -1.2
13,998 + -0.1
14,325 - -0.0
14,378 - -1.7
14,384 + -0.0
14,441 - 8374 mRNA_6 0.11 1.2
14,447 + 8374 mRNA_6 0.11 0.3
14,457 + 8374 mRNA_6 0.11 0.0
14,479 + 8374 mRNA_6 0.12 0.5
14,583 - 8374 mRNA_6 0.13 -1.5