Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370 mRNA_3: 8371 - K15161 CCNC, SSN8 cyclin C, at 8155 to 10023 8371

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,268 + 8369 mRNA_1 0.79 0.4
2,361 - 8369 mRNA_1 0.89 -0.1
2,441 + -2.1
2,550 + 0.3
2,552 - -0.6
2,564 + -0.6
2,701 + 1.0
2,839 - -0.1
2,853 + 1.7
2,946 - -0.2
3,005 - 0.8
3,125 - 0.4
3,136 + 1.5
5,042 - 8370 mRNA_2 0.40 -0.5
5,788 - 8370 mRNA_2 0.56 -0.1
7,143 + 8370 mRNA_2 0.85 -4.0
7,817 - 0.7
7,865 + 0.1
7,991 + 0.1
8,148 - 1.2
8,150 - -2.2
8,205 - -0.5
8,285 + -1.2
8,396 + 8371 mRNA_3 0.13 0.0
8,694 - 8371 mRNA_3 0.29 -1.6
8,707 + 8371 mRNA_3 0.30 -1.1