Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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595 + -0.9
609 - 0.5
637 - -1.5
651 + -0.8
654 + 0.6
659 - 0.3
663 + -1.1
672 - -0.6
673 + 0.1
685 + 1.1
725 + -1.0
790 - -1.6
791 + -0.1
798 + -0.6
798 + -0.9
804 - 0.5
821 + -2.3
860 + 0.5
899 - 0.3
916 + 1.5
939 + 0.5
957 + -1.4
975 - -1.4
976 + 2.5
996 - -0.7
1,005 + -0.9
1,005 - -0.3
1,007 - 0.7
1,052 + -0.4
1,058 + 2.2
1,070 + 0.4
1,113 - 0.2
1,115 - 0.2
1,117 + -0.1
1,207 + 0.0
1,257 + 0.4
1,285 - 0.9
1,359 - -0.1
1,422 + 1.0
1,960 + 8369 mRNA_1 0.44 0.5
2,268 + 8369 mRNA_1 0.79 0.4
2,361 - 8369 mRNA_1 0.89 -0.1
2,441 + -2.1
2,550 + 0.3
2,552 - -0.6
2,564 + -0.6
2,701 + 1.0
2,839 - -0.1
2,853 + 1.7
2,946 - -0.2
3,005 - 0.8
3,125 - 0.4
3,136 + 1.5