Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8420

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8419: 16787 - K14310 NUP205, NUP192 nuclear pore complex protein Nup205, at 1175387 to 1181685 16787 mRNA_8420: 16788 - SUPERFAMILY--SSF52047, at 1181811 to 1183583 16788 mRNA_8421: 16789 - K05285 PIGN phosphatidylinositol glycan, class N, at 1183615 to 1187180 16789

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,182,043 + 16788 mRNA_8420 0.13 0.6
1,182,054 + 16788 mRNA_8420 0.14 0.0
1,182,077 - 16788 mRNA_8420 0.15 0.9
1,182,155 - 16788 mRNA_8420 0.19 0.3
1,182,218 - 16788 mRNA_8420 0.23 1.8
1,182,371 + 16788 mRNA_8420 0.32 0.6
1,182,562 - 16788 mRNA_8420 0.42 -1.6
1,182,607 + 16788 mRNA_8420 0.45 -0.8
1,182,630 - 16788 mRNA_8420 0.46 -1.2
1,182,778 + 16788 mRNA_8420 0.55 -0.7
1,182,904 + 16788 mRNA_8420 0.62 0.1
1,182,967 - 16788 mRNA_8420 0.65 -1.2
1,182,983 + 16788 mRNA_8420 0.66 0.1
1,183,039 - 16788 mRNA_8420 0.69 1.3
1,183,097 + 16788 mRNA_8420 0.73 -1.5
1,183,118 + 16788 mRNA_8420 0.74 0.2
1,183,119 + 16788 mRNA_8420 0.74 -0.4
1,183,189 - 16788 mRNA_8420 0.78 1.0
1,183,192 - 16788 mRNA_8420 0.78 -0.6
1,183,198 - 16788 mRNA_8420 0.78 1.2
1,183,209 + 16788 mRNA_8420 0.79 -1.3
1,183,220 + 16788 mRNA_8420 0.79 -0.6
1,183,231 - 16788 mRNA_8420 0.80 0.1
1,183,249 + 16788 mRNA_8420 0.81 -0.5
1,183,440 + 0.4
1,183,456 - -0.8
1,183,551 + 0.5
1,183,646 - 1.3
1,183,782 - -0.0
1,183,981 + 16789 mRNA_8421 0.10 0.3
1,184,385 + 16789 mRNA_8421 0.22 0.3
1,184,504 + 16789 mRNA_8421 0.25 -3.2