Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8412

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8411: 16779 - KOG2898 Predicted phosphate acyltransferase, contains PlsC domain, at 1159306 to 1160640 16779 mRNA_8412: 16780 - KOG2504 Monocarboxylate transporter, at 1160718 to 1162780 16780 mRNA_8413: 16781 - KOG4484 Uncharacterized conserved protein, at 1162825 to 1164107 16781

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,159,751 - 16779 mRNA_8411 0.33 2.6
1,159,824 - 16779 mRNA_8411 0.39 -0.7
1,159,982 + 16779 mRNA_8411 0.51 -1.2
1,160,032 + 16779 mRNA_8411 0.54 0.6
1,160,072 + 16779 mRNA_8411 0.57 0.9
1,160,134 - 16779 mRNA_8411 0.62 1.3
1,160,190 - 16779 mRNA_8411 0.66 1.5
1,160,194 - 16779 mRNA_8411 0.67 1.0
1,160,210 + 16779 mRNA_8411 0.68 0.0
1,160,332 - 16779 mRNA_8411 0.77 0.6
1,160,365 + 16779 mRNA_8411 0.79 1.6
1,160,377 + 16779 mRNA_8411 0.80 1.4
1,160,514 - -0.3
1,160,525 + -1.9
1,160,530 + -0.8
1,160,542 + -1.2
1,160,677 + -0.3
1,160,681 + -1.0
1,160,813 + 0.5
1,160,813 + -0.3
1,160,823 - -1.5
1,160,825 + 0.7
1,160,834 - -0.6
1,160,834 + 0.5
1,160,962 - 16780 mRNA_8412 0.12 0.4
1,160,996 + 16780 mRNA_8412 0.13 -0.1
1,161,069 - 16780 mRNA_8412 0.17 0.5
1,161,239 - 16780 mRNA_8412 0.25 0.1
1,161,264 - 16780 mRNA_8412 0.26 0.1
1,161,452 + 16780 mRNA_8412 0.36 1.0
1,161,535 - 16780 mRNA_8412 0.40 0.3
1,161,575 - 16780 mRNA_8412 0.42 0.1
1,161,682 + 16780 mRNA_8412 0.47 -1.5
1,161,716 + 16780 mRNA_8412 0.48 -0.1
1,161,821 - 16780 mRNA_8412 0.53 0.2
1,161,821 - 16780 mRNA_8412 0.53 -1.3
1,161,827 + 16780 mRNA_8412 0.54 1.0
1,161,827 + 16780 mRNA_8412 0.54 -0.1
1,161,827 + 16780 mRNA_8412 0.54 1.2
1,161,827 + 16780 mRNA_8412 0.54 1.1
1,161,858 + 16780 mRNA_8412 0.55 -0.0
1,161,972 - 16780 mRNA_8412 0.61 0.3
1,162,143 + 16780 mRNA_8412 0.69 0.8
1,162,281 + 16780 mRNA_8412 0.76 1.0
1,162,314 - 16780 mRNA_8412 0.77 1.3
1,162,385 + 16780 mRNA_8412 0.81 1.6
1,162,385 - 16780 mRNA_8412 0.81 0.6
1,162,563 - 16780 mRNA_8412 0.89 1.7
1,162,666 - -0.1
1,162,713 - 1.6
1,162,714 + 0.5
1,162,739 + 0.2
1,162,880 + 0.4
1,162,954 + 16781 mRNA_8413 0.10 -0.8
1,163,723 - 16781 mRNA_8413 0.70 1.7
1,163,729 + 16781 mRNA_8413 0.70 0.3