Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8403

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8402: 16770 - K07579 K07579 putative methylase, at 1133086 to 1134230 16770 mRNA_8403: 16771 - K08829 MAK male germ cell-associated kinase, at 1134667 to 1138585 16771 mRNA_8404: 16772 - Hypothetical Protein, at 1139577 to 1141043 16772

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,133,943 + 16770 mRNA_8402 0.75 -2.0
1,133,947 - 16770 mRNA_8402 0.75 0.4
1,133,987 + 16770 mRNA_8402 0.79 -0.2
1,134,006 - 16770 mRNA_8402 0.80 0.4
1,134,089 + 16770 mRNA_8402 0.88 -0.6
1,134,142 - 0.0
1,134,152 - 0.0
1,134,157 - -0.8
1,134,302 + -0.6
1,134,446 + -3.0
1,134,454 + 0.3
1,134,475 + -0.6
1,134,484 - 0.3
1,134,613 + -1.4
1,134,744 - 0.9
1,134,772 + -0.8
1,135,010 + -0.9
1,135,368 + 16771 mRNA_8403 0.18 -0.5
1,135,405 - 16771 mRNA_8403 0.19 -1.0
1,135,577 - 16771 mRNA_8403 0.23 1.3
1,135,916 + 16771 mRNA_8403 0.32 0.0
1,136,103 + 16771 mRNA_8403 0.37 -0.3
1,136,171 - 16771 mRNA_8403 0.38 1.4
1,136,406 - 16771 mRNA_8403 0.44 0.4
1,136,431 - 16771 mRNA_8403 0.45 1.9
1,136,600 + 16771 mRNA_8403 0.49 -0.3
1,136,918 - 16771 mRNA_8403 0.57 -0.7
1,136,930 - 16771 mRNA_8403 0.58 -1.1
1,137,243 - 16771 mRNA_8403 0.66 -0.9
1,137,342 - 16771 mRNA_8403 0.68 -1.0
1,137,352 + 16771 mRNA_8403 0.69 -0.7
1,137,377 + 16771 mRNA_8403 0.69 1.6
1,137,606 + 16771 mRNA_8403 0.75 0.4
1,138,164 + 16771 mRNA_8403 0.89 -0.3
1,138,685 - 1.5
1,138,696 + 0.3
1,138,828 + 0.7
1,138,831 + -1.0
1,138,969 - -0.3
1,138,977 + -1.1
1,138,978 + 1.8
1,138,984 + 0.3
1,138,990 - -2.3
1,139,005 - -0.2
1,139,012 + 1.6
1,139,023 + -0.2
1,139,107 + 1.9
1,139,129 + -2.1
1,139,219 + 0.3
1,139,253 + 0.5
1,139,268 - -0.3
1,139,277 + 1.3
1,139,316 - -1.3
1,139,324 - 0.5
1,139,388 - -0.0
1,139,413 - -0.2
1,139,431 - -0.4
1,139,458 + 0.7
1,139,471 + 0.2
1,139,474 + -0.3
1,139,510 + -0.3
1,139,533 + 2.1