Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8398

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8397: 16765 - K02946 RP-S10, MRPS10, rpsJ small subunit ribosomal protein S10, at 1122162 to 1123126 16765 mRNA_8398: 16766 - HMMPfam-Histone deacetylation protein Rxt3-PF08642, at 1123340 to 1126588 16766

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,123,004 + 16765 mRNA_8397 0.87 -0.3
1,123,155 + 0.3
1,123,212 - -0.3
1,123,259 - 0.4
1,123,263 - 0.1
1,123,267 - 1.0
1,123,273 + 0.3
1,123,274 + -0.3
1,123,280 - 1.2
1,123,281 - -2.5
1,123,282 + -1.9
1,123,284 + 0.6
1,123,286 + 0.1
1,123,289 - 0.7
1,123,290 + -0.3
1,123,292 - 0.5
1,123,337 - -0.0
1,123,448 + 1.7
1,123,607 + -0.4
1,123,737 + 16766 mRNA_8398 0.12 0.1
1,123,742 + 16766 mRNA_8398 0.12 0.6
1,123,745 + 16766 mRNA_8398 0.12 -1.3
1,123,756 + 16766 mRNA_8398 0.13 0.7
1,123,776 + 16766 mRNA_8398 0.13 -2.5
1,123,883 + 16766 mRNA_8398 0.17 1.0
1,123,893 + 16766 mRNA_8398 0.17 -0.9
1,123,917 + 16766 mRNA_8398 0.18 -0.1
1,124,049 - 16766 mRNA_8398 0.22 0.5
1,124,059 + 16766 mRNA_8398 0.22 0.2
1,124,064 + 16766 mRNA_8398 0.22 -0.5
1,124,089 + 16766 mRNA_8398 0.23 0.4
1,124,188 - 16766 mRNA_8398 0.26 0.7
1,124,529 + 16766 mRNA_8398 0.37 -0.2
1,124,616 + 16766 mRNA_8398 0.39 -1.6
1,124,768 - 16766 mRNA_8398 0.44 0.3
1,124,911 - 16766 mRNA_8398 0.48 1.3
1,125,230 - 16766 mRNA_8398 0.58 1.4
1,125,603 - 16766 mRNA_8398 0.70 -0.5
1,125,647 + 16766 mRNA_8398 0.71 -0.4
1,125,651 + 16766 mRNA_8398 0.71 -0.1
1,125,657 + 16766 mRNA_8398 0.71 -0.3
1,125,980 + 16766 mRNA_8398 0.81 -1.6
1,126,240 - 16766 mRNA_8398 0.89 0.3
1,126,508 - -1.0
1,126,548 - 0.0
1,126,566 + -0.6
1,126,663 - 0.2
1,126,691 - -0.7
1,126,709 - -1.6
1,126,716 - -1.3
1,126,836 + -0.1
1,126,847 - 0.3
1,126,991 - -0.4
1,127,000 + -0.9
1,127,140 - 1.8
1,127,171 - 0.8
1,127,404 - -0.0