Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8391

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8390: 16758 - K00387 SUOX sulfite oxidase, at 1099792 to 1101469 16758 mRNA_8391: 16759 - HMMPfam-Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A-PF12222, at 1101594 to 1103958 16759 mRNA_8392: 16760 - ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197, at 1104221 to 1108536 16760

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,100,674 - 16758 mRNA_8390 0.53 -1.2
1,100,695 - 16758 mRNA_8390 0.54 -0.2
1,100,803 - 16758 mRNA_8390 0.60 -0.2
1,101,082 + 16758 mRNA_8390 0.77 -1.9
1,101,239 - 16758 mRNA_8390 0.86 0.8
1,101,394 + -1.3
1,101,539 - 0.5
1,101,542 + 1.0
1,101,557 + -0.0
1,101,561 + -0.2
1,101,562 - 0.8
1,101,701 + -0.2
1,101,732 + -0.7
1,102,160 + 16759 mRNA_8391 0.24 2.3
1,102,622 + 16759 mRNA_8391 0.43 -0.1
1,102,730 - 16759 mRNA_8391 0.48 -1.0
1,102,888 - 16759 mRNA_8391 0.55 -0.3
1,102,918 + 16759 mRNA_8391 0.56 1.5
1,103,182 + 16759 mRNA_8391 0.67 -0.7
1,103,466 - 16759 mRNA_8391 0.79 0.7
1,103,475 - 16759 mRNA_8391 0.80 1.2
1,103,630 - 16759 mRNA_8391 0.86 -0.9
1,103,634 - 16759 mRNA_8391 0.86 -0.2
1,103,681 + 16759 mRNA_8391 0.88 -0.1
1,103,764 - -0.4
1,104,045 + 2.3
1,104,067 + 1.3
1,104,230 + -0.2
1,104,238 - 0.2
1,104,392 + -1.1
1,104,396 + -1.2
1,104,518 + -1.6