Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8326

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8325: 16693 - KOG1688 Golgi proteins involved in ER retention (RER), at 945635 to 946237 16693 mRNA_8326: 16694 - Hypothetical Protein, at 947048 to 947790 16694 mRNA_8327: 16695 - K10251 HSD17B12, KAR, IFA38 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase, at 948369 to 949936 16695

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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946,287 + 0.3
946,289 - -0.7
946,548 - 2.0
946,565 - 0.3
946,565 + 0.7
946,821 - -0.1
946,872 + -0.0
947,553 - 16694 mRNA_8326 0.68 0.1
947,585 - 16694 mRNA_8326 0.72 0.2
947,588 + 16694 mRNA_8326 0.73 0.7
947,590 + 16694 mRNA_8326 0.73 -0.2
947,593 + 16694 mRNA_8326 0.73 0.7
947,716 - 1.1
947,735 + -0.4
947,864 + -0.6
947,892 + -0.1
947,898 + -1.8
948,016 - -0.1
948,025 + -0.3
948,031 + -3.4
948,198 + -0.4
948,320 - 0.7
948,339 + 1.6
948,339 + -0.5