Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8294

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8293: 16661 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339, at 865837 to 868084 16661 mRNA_8294: 16662 - Hypothetical Protein, at 869009 to 869206 16662 mRNA_8295: 16663 - Hypothetical Protein, at 869651 to 870841 16663

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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868,106 - 1.4
868,114 - 0.9
868,225 - 0.7
868,226 + -2.5
868,236 + -0.5
868,238 + -0.2
868,254 - -1.1
868,258 - -2.1
868,265 - 1.5
868,279 + -0.3
868,301 + 0.8
868,303 - -0.6
868,304 + -0.7
868,423 - 1.0
868,426 - -0.0
868,444 - -0.4
868,468 - 0.6
868,536 - 0.6
868,542 + 1.8
868,567 + -0.6
868,572 + 0.2
868,662 + -0.6
868,687 - -1.1
868,711 - -1.1
868,840 - 0.2
868,972 + -1.3
869,045 + 16662 mRNA_8294 0.18 0.3
869,061 - 16662 mRNA_8294 0.26 0.8
869,117 - 16662 mRNA_8294 0.55 -1.7
869,127 + 16662 mRNA_8294 0.60 -1.4
869,166 + 16662 mRNA_8294 0.79 0.9
869,175 - 16662 mRNA_8294 0.84 1.1
869,178 + 16662 mRNA_8294 0.85 -1.5
869,195 + 0.4
869,218 - -0.8
869,233 + 1.4
869,261 + 1.3
869,262 - 1.9
869,270 + 0.3
869,273 - -0.8
869,273 - 0.0
869,276 - -0.3
869,278 - -0.8
869,288 + 0.9
869,290 + 0.5
869,292 - 2.9
869,302 + 0.5
869,303 + 2.0
869,345 - 1.6
869,359 - -1.7
869,371 + 1.8
869,383 - -0.3
869,396 - -0.3
869,407 + -1.0
869,409 - 0.5
869,425 + -1.5
869,559 - -0.9
869,876 + 16663 mRNA_8295 0.19 -0.8
870,153 - 16663 mRNA_8295 0.42 1.2