Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8263

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8262: 16630 - K01958 PC, pyc pyruvate carboxylase, at 792361 to 796882 16630 mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797648 to 800551 16631 mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800850 to 802295 16632

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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796,756 + -1.8
796,770 + -1.5
796,773 - -0.7
796,793 - -1.0
796,809 + -0.4
796,906 - -1.2
796,906 + -2.1
796,926 + -3.0
796,939 + -0.7
796,944 - -0.3
796,956 + -0.9
797,053 - -1.2
797,057 - 0.4
797,082 - -1.7
797,084 + -3.5
797,087 - -2.6
797,090 + 1.3
797,112 - -0.1
797,221 + -0.3
797,222 + -0.9
797,223 - 1.6
797,238 - -0.1
797,251 - 0.4
797,275 + 1.5
797,283 - -0.9
797,284 + -1.3
797,288 - 1.9
797,300 + -0.7
797,301 + -0.2
797,319 - -0.6
797,321 - 0.9
797,356 + 2.5
797,360 - -2.4
797,361 - 0.8
797,376 - -1.3
797,377 + -0.6
797,389 - 0.1
797,408 + 0.3
797,413 - 2.1
797,415 + 1.2
797,424 + -0.7
797,714 - 1.5
797,863 - 0.7
797,872 - 2.9
797,890 + -0.7
798,027 + 16631 mRNA_8263 0.13 -0.9
798,299 - 16631 mRNA_8263 0.22 1.5
798,593 - 16631 mRNA_8263 0.33 -2.4
798,847 + 16631 mRNA_8263 0.41 -1.0
799,171 - 16631 mRNA_8263 0.52 -0.5
799,718 + 16631 mRNA_8263 0.71 -0.3
800,021 - 16631 mRNA_8263 0.82 -0.6
800,035 + 16631 mRNA_8263 0.82 0.4
800,188 + 16631 mRNA_8263 0.87 0.5
800,300 - 0.4
800,626 - 0.2
800,648 + -0.0
801,024 + 16632 mRNA_8264 0.12 0.5
801,195 + 16632 mRNA_8264 0.24 0.1
801,226 - 16632 mRNA_8264 0.26 1.6